GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 18:13:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 8 from Patent WO2010025888.
HC473799.1:950-970
AAACAAGTGAAAAATATAGTTGCAACTCAT950GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
Sequence 8 from patent US 8637737.
HK309016.1:950-970
AAACAAGTGAAAAATATAGTTGCAACTCAT950GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
JP 2012501172-A/7: ENGINEERING OF BOLTING RESISTANCE IN SUGAR BEET BY MEANS OF THE TRANSGENIC EXPRESSION OF THE BEET HOMOLOGUE OF FLOWERING TIME CONTROL GENE FT.
HV571885.1:950-970
AAACAAGTGAAAAATATAGTTGCAACTCAT950GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
Sequence 34 from Patent EP3546582.
MP338146.1:816-836
AAACAAGTGAAAAATATAGTTGCAACTCAT816GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
Sequence 34 from Patent WO2019185609.
MP338237.1:816-836
AAACAAGTGAAAAATATAGTTGCAACTCAT816GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
66-L108505-1033-133-D18-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-133-D18 5', genomic survey sequence.
JY378879.1:467-487
AAACAAGTGAAAAATATAGTTGCAACTCAT467GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
Beta vulgaris flowering locus T-like protein FT2 (FT2) gene, complete cds.
HM448911.1:950-970
AAACAAGTGAAAAATATAGTTGCAACTCAT950GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392550.1:3935208-3935228
AAACAAGTGAAAAATATAGTTGCAACTCAT3935208GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 4.
OX392559.1:3955457-3955477
AAACAAGTGAAAAATATAGTTGCAACTCAT3955457GATGCAACATGAGATGCGATGAAATATGATAGTAACTTGAGCTCACAACTC
Chenopodium album genome assembly, chromosome: 13.
OX419220.1:3321170-3321190
AAAACATATAATGAAGATATAGTTGCTACT3321170GATGCAACATGAGATGCGATGATAGATGATGGGAACCTGCGTTGAGGACTC
Chenopodium album genome assembly, chromosome: 22.
OX419229.1:2891832-2891852
AAAACATATAATGAAGAGATAGTTGCTACT2891832GATGCAACATGAGATGCGATGATAGATGATGGGAACCTGCGTTGAGGACTC
Chenopodium album genome assembly, chromosome: 22.
OX419229.1:9711040-9711060
ACATATAATGATCATGATATATTCGCTTCT9711040GATGCAACATGAGATGCGATGATAGATGATAGGAACCTGCGTTGATTACTC
Chenopodium album genome assembly, chromosome: 21.
OX419228.1:17814635-17814655
GAGTAATCAACGCAGGTTCCCATCATCTAT17814635CATCGCATCTCATGTTGCATCAGAAGCGAATATATCTTCATCATTATATGT
Chenopodium album genome assembly, chromosome: 21.
OX419228.1:18011718-18011738
GAGTCCTAAACGCAGGTTCCCACCATCTAT18011718CATCGCATCTCATGTTGCATCAGAAAGCAAATATATCTTCATTATTATATG
Chenopodium album genome assembly, chromosome: 21.
OX419228.1:18125550-18125570
GAGTCCTAAACGCAGGTTCCCACCATCTAT18125550CATCGCATCTCATGTTGCATCAGAAAGCAAATATATCTTCATTATAATATG
Chenopodium album genome assembly, chromosome: 21.
OX419228.1:18143946-18143966
GAGTCCTAAACGCAGGTTCCCACCATCTAT18143946CATCGCATCTCATGTTGCATCAGAAAGCAAATATATCTTCATTATTATATG
Chenopodium album genome assembly, chromosome: 21.
OX419228.1:18144918-18144938
GAGTCCTAAACGCAGGTTCCCATCATCTAT18144918CATCGCATCTCATGTTGCATCAGAAAGCAAATATATCTTCATTATTATATG
Chenopodium album genome assembly, chromosome: 21.
OX419228.1:31141851-31141871
GAGTCCTCAACGCAGGTTCCCATCATCTAT31141851CATCGCATCTCATGTTGCATCAGAAGTAAATATATCTTCATCATTATATGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGCAACATGAGATGCGATG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGCAACATGAGATGCGATG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.590 | 0.582 | search_plus_done; http://172.18.8.135:50400/match?q=GATGCAACATGAGATGCGATG&k=0&no_gap=0&offset=0&limit=50
0.676 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=CATCGCATCTCATGTTGCATC&k=0&no_gap=0&offset=0&limit=38
0.680 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).