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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:00:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

GA__Eb0012J13f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Eb0012J13f, mRNA sequence.
BF271732.1:136-155
GCTCACGTTAAGTTGGGGCACATGTTAGCT136GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTGCCCTTG
GA__Ed0050E08f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0050E08f, mRNA sequence.
BQ402607.1:338-357
GCTCAGGTTAAGTTGGGGCACATGTTAGCT338GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTCCCCTTG
EST1054904 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT544264.1:751-770
GCTCAGGTTAAGTTGGGGCACATGTTAGCT751GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTCCCCTTG
EST1077083 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT566443.1:820-839
GCTCAGGTTAAGTTGGGGCACATGTTGGCT820GATGCTTTTCTCACCCATTTCAATGCTCCACCATCACAATCTTCCCCTTG
EST1078535 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT567895.1:557-576
GCTCATGTTAAGTTGGGGCACATGTTGGCT557GATGCTTTTCTCACCCATTTCAATGCTCCACCATCACAATCTTCCCCTTG
UFL_007_35 Cotton fiber 0-10 day post anthesis Gossypium hirsutum cDNA, mRNA sequence.
ES835280.1:829-848
GCTCAGGTTAAGTTGGGGCACATGTTAGCT829GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTCCCCTTG
sg153A04 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
EV498920.1:36-55
GGTACAAGTTAGTTGGGGCACATGTTAGCT36GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTCCCCTTG
D06-GC5524 Gossypium barbadense L. line Hai7124 6 to 24 dpa fiber cDNA library Gossypium barbadense cDNA, mRNA sequence.
JK805320.1:422-441
GCTCAGGTTAAGTTGGGGCACATGTTAGCT422GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTCCCCTTG
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:125482730-125482749
GCTCAGGTTAAGTTGGGGCACATGTTAGCT125482730GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTCCCCTTG
Gossypium herbaceum isolate Zhongcao1 chromosome 1.
CP106687.1:125486467-125486486
GCTCAGGTTAAGTTGGGGCACATGTTAGCT125486467GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTCCCCTTG
Gossypium rotundifolium isolate GPK201 chromosome 1.
CP106722.1:199254511-199254530
GCTCAGGTTAAGTTGGGGCACATGTTGGCT199254511GATGCTTTTCTCACCCATTTCAATGCCCCACCATCACAATCTTCCCCTTG
Daucus carota subsp. sativus clone BAC C044A06 genomic sequence.
FJ148797.1:71-90
GCTTGAGTTGCTAACGGGATTAATGTTGGT71GATGCTTTTCTCACCCATTTTAATTGGCAAGTTTTTCCTTGGAGTCCTCT
Sporolactobacillus terrae 70-3 DNA, complete genome.
AP021853.1:387358-387377
GCGTACCAACAGGCGCGCAGCACGGCGATC387358GATGCTTTTCTCACCCATTTCCCGGCACCGGAAGCGCAGCAAATACAACG
Sporolactobacillus terrae strain DLG3 chromosome, complete genome.
CP025688.1:315889-315908
GCGTACCAACAGGCGCGCAGCACGGCGATC315889GATGCTTTTCTCACCCATTTCCCGGCACCGGAAGCGCAGCAAATACAACG
Sporolactobacillus terrae strain DRG1 chromosome, complete genome.
CP025689.1:309462-309481
GCGTACCAACAGGCGCGCAGCACGGCGATC309462GATGCTTTTCTCACCCATTTCCCGGCACCGGAAGCGCAGCAAATACAACG
Sporolactobacillus terrae strain EFEL7003 chromosome, complete genome.
CP082837.1:3114027-3114046
GCGTACCAACAGGCGCGCAGCACGGCGATC3114027GATGCTTTTCTCACCCATTTCCCGGCACCGGAAGCGCAGCAAATACAACG
Onychomys torridus genome assembly, chromosome: 1.
LR877188.1:177456874-177456893
GAACCTCCCCACGGAAAGATTCATCTGCAA177456874AAATGGGTGAGAAAAGCATCCTGGCTGTCCCTCAATTGCTGCATGATGGG
Onychomys arenicola genome assembly, chromosome: 1.
OX460347.1:219704252-219704271
GAACCTCCCCACGGAAAGATTCATCTGCAA219704252AAATGGGTGAGAAAAGCATCCTGGCTGTCCCTCAATTGCTGCATGATGGG
Onychomys leucogaster genome assembly, chromosome: 1.
OX460371.1:218994577-218994596
GAACCTCCCCACGGAAAGATTCATCTGCAA218994577AAATGGGTGAGAAAAGCATCCTGGTTGCCCCTCAGTTGCTGCATGATGGG
Onychomys leucogaster genome assembly, chromosome: 1.
OX460418.1:209556211-209556230
GAACCTCCCCACGGAAAGATTCATCTGCAA209556211AAATGGGTGAGAAAAGCATCCTGGTTGCCCCTCAGTTGCTGCATGATGGG
Onychomys arenicola genome assembly, chromosome: 1.
OX460442.1:212177141-212177160
GAACCTCCCCACGGAAAGATTCATCTGCAA212177141AAATGGGTGAGAAAAGCATCCTGGCTGTCCCTCAATTGCTGCATGATGGG
Onychomys torridus genome assembly, chromosome: 1.
OX460882.1:177456874-177456893
GAACCTCCCCACGGAAAGATTCATCTGCAA177456874AAATGGGTGAGAAAAGCATCCTGGCTGTCCCTCAATTGCTGCATGATGGG
Haliaeetus albicilla genome assembly, chromosome: 1.
OX381636.1:37222821-37222840
TTATGCCTGGTCTAGTGTGGCCACATAAAA37222821AAATGGGTGAGAAAAGCATCTTTTTTCATCTCTTTGAGCCCCTCTGCCTG
Gossypioides kirkii chromosome KI_01.
CP032244.1:573942-573961
CAAGGGGAAGATTGTGATGGTGGGGCATTG573942AAATGGGTGAGAAAAGCATCAGCCAACATGTGCCCCAACTTAACCTGAGC
Gossypium herbaceum isolate GPA1alz chromosome 1.
CP106699.1:595098-595117
CAAGGGGAAGATTGTGATGGTGGGGCATTG595098AAATGGGTGAGAAAAGCATCAGCTAACATGTGCCCCAACTTAACCTGAGC
Gossypium bickii isolate GPG1lz chromosome 1.
CP106715.1:905889-905908
CAAGGGGAAGATTGTGATGGTGGGGCATTG905889AAATGGGTGAGAAAAGCATCAGCCAACATGTGCCCCAACTTAACCTGAGC
Daucus carota isolate Kuroda chromosome 3.
CP125303.1:23114919-23114938
AGAGGACTCCAAAGAAAAACTTGCCAATTA23114919AAATGGGTGAGAAAAGCATCACCAACATTAATCCCGTTAGCAACTCAAGC
Tholera decimalis genome assembly, chromosome: Z.
OW964548.2:53845950-53845969
TTTGTGTAATTCATATAATCACCACTGTTA53845950AAATGGGTGAGAAAAGCATCGTGAGGAAACCGTGCCGTTTTTTCTAAGGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATGCTTTTCTCACCCATTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGCTTTTCTCACCCATTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.555 | 0.546 | search_plus_done; http://172.18.8.135:50400/match?q=GATGCTTTTCTCACCCATTT&k=0&no_gap=0&offset=0&limit=50
0.663 | 0.109 | search_minus_done; http://172.18.8.135:50400/match?q=AAATGGGTGAGAAAAGCATC&k=0&no_gap=0&offset=0&limit=34
0.672 | 0.008 | cgi_end;

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