GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-25 04:02:26, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Quercus robur EST, clone WZ0AQRAP14YA21FM1.
FN749426.1:23-42
CTGGGATTGATCTGATGAAGAA23GATGGAAGGGGTTGTTGCTATGGAGTCTTCTCCATATGCTGTGTGTGAGG
Quercus robur xylem EST, clone LG0AAB7YI03RM1.
FP032735.1:77-96
TTGGTTGTCTGGGATTGATCTGATGAAGAA77GATGGAAGGGGTTGTTGCTATGGAGTCTTCTCCATATGCTGTGTGTGAGG
Quercus robur root EST, clone LG0AAD3YP09RM1.
FP058297.1:77-96
TTGGTTGTCTGGGATTGATCTGATGAAGAA77GATGGAAGGGGTTGTTGCTATGGAGTCTTCTCCATATGCTGTGTGTGAGG
Glycyrrhiza uralensis cDNA, clone: KAN086-C07.F, 5'-end sequence.
FS252806.1:426-445
CATCAATGAATCTTACTTTTCGGTTAAAAT426GATGGAAGGGGTTGTTGCTACTTCATATTCAGCTG
Quercus dentata isolate Qdleaves-2020 chromosome 5.
CP116448.1:65032694-65032713
TCTTTTTTTTGGGTTTGATCTGATGAAGAA65032694GATGGAAGGGGTTGTTGCTATGGAGTCTTCTCCGTATGCTGCGTGTGAGG
Quercus cerris genome assembly, chromosome: 9.
OY770014.1:37835926-37835945
TTTTGTTTTTTGGGTTGATCTGATGAAGAA37835926GATGGAAGGGGTTGTTGCTATGGAGTCTTCTACATATGCTTTGTGTGAGG
Vigna angularis mRNA, clone: VES06G06.
HX944490.1:387-406
TCGAACGCCCAGACACGGGAAACACTCTCG387TAGCAACAACCCCTTCCATCTGGTCCCGGAAGTGGGTTCGGAAGAGGTGA
Vigna angularis var. angularis DNA, chromosome 8, almost complete sequence, cultivar: Shumari.
AP015041.1:2320495-2320514
TCGAACGCCCAGACACGGGAAACACTCTCG2320495TAGCAACAACCCCTTCCATCTGGTCCCGGAAGTGGGTTCGGAAGAGGTGA
Quercus variabilis isolate HB chromosome 9b.
CP129441.1:16681497-16681516
CCTCACACACAGCATATGTAGAAGACTCCA16681497TAGCAACAACCCCTTCCATCTTCTTCATCAGATCAAACCCAAAAGACAGA
Quercus variabilis isolate HB chromosome 9a.
CP129453.1:17101242-17101261
CCTCACACACAGCATATGTAGAAGACTCCA17101242TAGCAACAACCCCTTCCATCTTCTTCATCAGATCAAACCCAAAAGACAGA
Quercus robur genome assembly, chromosome: 9.
OW028772.1:16467476-16467495
CCTCACACACAGCATATGGAGAAGACTCCA16467476TAGCAACAACCCCTTCCATCTTCTTCATCAGATCAATCCCAGAAGACAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATGGAAGGGGTTGTTGCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGGAAGGGGTTGTTGCTA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.742 | 0.734 | search_plus_done; http://172.18.8.135:50400/match?q=GATGGAAGGGGTTGTTGCTA&k=0&no_gap=0&offset=0&limit=50
0.935 | 0.193 | search_minus_done; http://172.18.8.135:50400/match?q=TAGCAACAACCCCTTCCATC&k=0&no_gap=0&offset=0&limit=44
0.938 | 0.003 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).