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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:21:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum tuberosum cultivar P8 chromosome 8.
CP046686.1:1113620-1113639
CCTCTGGAATTACAGAACCACTTACGGCAA1113620GATGGCACATTGCACCTAACTACACAAGCAGGATTCGYCACTCCACAGTA
Solanum tuberosum cultivar P8 chromosome 8.
CP046686.1:1138228-1138247
CCTCTGGAATTACAGAACCACTTACGGCAA1138228GATGGCACATTGCACCTAACTACACAAGCAGGATTCGCCACTCCACAGTA
Solanum tuberosum cultivar MSH/14-112 chromosome 8.
CP046701.1:1113665-1113684
CCTCTGGAATTACAGAACCACTTACGGCAA1113665GATGGCACATTGCACCTAACTACACAAGCAGGATTCGYCACTCCACAGTA
Solanum tuberosum cultivar MSH/14-112 chromosome 8.
CP046701.1:1138273-1138292
CCTCTGGAATTACAGAACCACTTACGGCAA1138273GATGGCACATTGCACCTAACTACACAAGCAGGATTCGCCACTCCACAGTA
Solanum pinnatisectum cultivar CGN17745 chromosome 8.
CP047564.1:1106864-1106883
CCTCTGGAATTACAGAACCACTTACGGCAA1106864GATGGCACATTGCACCTAACTACACAAGCAGGATTCGTCACTCCACAGTA
Solanum pinnatisectum cultivar CGN17745 chromosome 8.
CP047564.1:1131472-1131491
CCTCTGGAATTACAGAACCACTTACGGCAA1131472GATGGCACATTGCACCTAACTACACAAGCAGGATTCGCCACTCCACAGTA
Solanum tuberosum cultivar Solyntus chromosome 8.
CP055241.1:1122721-1122740
CCTCTGGAATTACAGAACCACTTACGGCAA1122721GATGGCACATTGCACCTAACTACACAAGCAGGATTCGCCACTCCACAGTA
Solanum tuberosum cultivar Solyntus chromosome 8.
CP055241.1:1139160-1139179
CCTCTGGAATTACAGAACCACTTACGGCAA1139160GATGGCACATTGCACCTAACTACACAAGCAGGATTCGCCACTCCACAGTA
Solanum verrucosum cultivar 11H23 chromosome 8.
CP133619.1:817913-817932
CCTCTGGAATTACAGAACCACTTACGGCAA817913GATGGCACATTGCACCTAACTACACAAGCAGGATTCGCCACTCCACAGTA
Solanum dulcamara genome assembly, chromosome: 5.
OX359256.1:2468512-2468531
CCTCTGGAATTACAGAACCACTTGCGGCAA2468512GATGGCACATTGCACCTAACAACACAAGCAGGATTCGTCACTCCACAGTA
FSPM2447 Potato tuber cDNA library Solanum tuberosum cDNA clone FSPM2447, mRNA sequence.
FG549668.1:21-40
TGACGAATCCTGCTTGTGTA21GTTAGGTGCAATGTGCCATCTTGCCGTAAGTGGTTCTGTAATTCCAGAGG
Solanum lycopersicum Micro-Tom DNA, chromosome 8, draft genome sequence.
AP028942.1:2451497-2451516
TACTGTGGAGTGACGAATCCTGCTTGTGTA2451497GTTAGGTGCAATGTGCCATCTTGCCGTAAGTGGTTCTGTAATTCCAGAGG
Solanum lycopersicum cultivar I-3 chromosome 8.
CP023764.1:1671197-1671216
TACTGTGGAGTGACGAATCCTGCTTGTGTA1671197GTTAGGTGCAATGTGCCATCTTGCCGTAAGTGGTTCTGTAATTCCAGAGG
Solanum pennellii chromosome ch08, complete genome.
HG975447.1:1856666-1856685
TACTGTGGAGTGACGAATCCTGCTTGTGTA1856666GTTAGGTGCAATGTGCCATCTTGCCGTAAGTGGTTCTGTAATTCCAGAGG
Solanum lycopersicum chromosome ch08, complete genome.
HG975520.1:1671200-1671219
TACTGTGGAGTGACGAATCCTGCTTGTGTA1671200GTTAGGTGCAATGTGCCATCTTGCCGTAAGTGGTTCTGTAATTCCAGAGG
Solanum lycopersicum genome assembly, chromosome: 8.
OU640351.1:2462823-2462842
TACTGTGGAGTGACGAATCCTGCTTGTGTA2462823GTTAGGTGCAATGTGCCATCTTGCCGTAAGTGGTTCTGTAATTCCAGAGG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATGGCACATTGCACCTAAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGGCACATTGCACCTAAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.148 | 0.139 | search_plus_done; http://172.18.8.135:50400/match?q=GATGGCACATTGCACCTAAC&k=0&no_gap=0&offset=0&limit=50
0.329 | 0.181 | search_minus_done; http://172.18.8.135:50400/match?q=GTTAGGTGCAATGTGCCATC&k=0&no_gap=0&offset=0&limit=40
0.333 | 0.004 | cgi_end;

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