GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-26 07:59:56, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Capricornis sumatraensis isolate serow.1 chromosome 3.
CP135628.1:11018070-11018089
ACCTTAATCCTCAGTGTGACTCTATCTGTT11018070GATGGGGCCTGTTAAGATGACAAAGGATAAATGAGATCACAAGGGTGGGA
CLVY8058.b1_D24.ab1 CLV(XYZ) lettuce virosa Lactuca virosa cDNA clone CLVY8058, mRNA sequence.
DW169765.1:327-346
GAAACATTTGTTGAGGGCGAAAGCGAAGGA327GATGGGGCCTGTTAAGATGAGTAAGTTGTGAAGAAGGTTATGTTTTGTTG
Aeschynomene afraspera mRNA 5-prime sequence from clone ADL0ACA25YP02 (ADL0ACA25YP02CM1).
LO000024.1:605-624
GAAGCATTTGCTGAGGTCAAAAGCAAAGGA605GATGGGGCCTGTTAAGATGAGCAAGCTGTAACTATCTTAAAACTGATTAT
Aeschynomene afraspera mRNA 5-prime sequence from clone ADL0ACA6YO10 (ADL0ACA6YO10CM1).
LO009888.1:38-57
GAAGCATTTGCTGAGGTCAAAAGCAAAGGA38GATGGGGCCTGTTAAGATGAGCAAGCTGTAACTATCTTAAAACTGATTAT
TSA: Lactuca sativa Letassy_X1_19923 mRNA sequence.
JI579692.1:1775-1794
GAAACATTTGTTGAGGGCGAAAGCGAAGGA1775GATGGGGCCTGTTAAGATGAGTAAGTTGTGAAGAAGTTTATGTTTTATTG
Ovis canadensis canadensis isolate 43U chromosome 24 sequence.
CP011909.1:31151869-31151888
TCCCACCCTTGTGATCTCATTTATCCTTTG31151869TCATCTTAACAGGCCCCATCAACAGATAGAGTCACACTGAGGATTAAGGT
Cervus elaphus genome assembly, chromosome: 10.
OU343087.1:44946505-44946524
TCCCACCCTTTTGATCTCATTTATCCTTTG44946505TCATCTTAACAGGCCCCATCAACTGATAGAGTCACACAGAGGATTAAGAT
Vigna angularis mRNA, clone: VES03I14.
HX943418.1:252-271
CTTTTTTCGTCATGATCATTTATAACTTGC252TCATCTTAACAGGCCCCATCTCTTTTGCCTTTGCCCTTAGAAAGTGCTTC
TSA: Lactuca serriola Serrassy_T_P2_11875 mRNA sequence.
JO026899.1:122-141
CAATAAAACATAAACTTCTTCACAACTTAC122TCATCTTAACAGGCCCCATCTCCTTCGCTTTCGCCCTCAACAAATGTTTC
Ailanthus altissima genome assembly, chromosome: 11.
OX327693.1:28360502-28360521
GATCATCATCAAATTACAGCTTACTCTTGG28360502TCATCTTAACAGGCCCCATCTCGTTTGCCTTGGCCCTTAGAACATGCTTC
Lactuca saligna genome assembly, chromosome: 1.
OX465077.1:33768579-33768598
CAATAAAACATAAACTTCTTCACAACTTAC33768579TCATCTTAACAGGCCCCATCTCCTTCGCTTTCGCCCTCAACAAATGTTTC
Trifolium subterraneum genome assembly, chromosome: 1.
OX637461.1:11890350-11890369
TCTAATTCTAATATGATTATTACAACTTGC11890350TCATCTTAACAGGCCCCATCTCATTGGCCTTAGCCCTCAACAAATTCTTT
Trifolium subterraneum genome assembly, chromosome: 2.
OX637462.1:32304126-32304145
GTCACTCTAATATGGTTATTTACAATTTGC32304126TCATCTTAACAGGCCCCATCTCCTTGGCCTTAGCCCTCAACAAATTCTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGGGGCCTGTTAAGATGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGGGGCCTGTTAAGATGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.307 | 0.298 | search_plus_done; http://172.18.8.135:50400/match?q=GATGGGGCCTGTTAAGATGA&k=0&no_gap=0&offset=0&limit=50
0.414 | 0.107 | search_minus_done; http://172.18.8.135:50400/match?q=TCATCTTAACAGGCCCCATC&k=0&no_gap=0&offset=0&limit=45
0.420 | 0.005 | cgi_end;

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