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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 08:05:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 1365 from patent US 9163255.
HL271076.1:160-184
GCTAATCCTGACTCTGTTGTGGTTGACATC160GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
Sequence 1875 from patent US 9163255.
HL271586.1:160-184
GCTAATCCTGACTCTGTTGTGGTTGACATC160GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
Sequence 1365 from Patent WO2011024207.
JA858292.1:160-184
GCTAATCCTGACTCTGTTGTGGTTGACATC160GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
Sequence 1875 from Patent WO2011024207.
JA858802.1:160-184
GCTAATCCTGACTCTGTTGTGGTTGACATC160GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
N100572e rootphos(-) Medicago truncatula cDNA clone MHRP-8E10, mRNA sequence.
AW171678.2:5-29
CATC5GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
EST335631 DSIL Medicago truncatula cDNA clone pDSIL-8C20, mRNA sequence.
AW776566.1:261-285
GCCAATCCCGACGCTATTGTGGTTGACATC261GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
Trifolium pratense cDNA clone:RCE10684.
BB911557.1:381-405
GCTAATCCTGACGCTATTGTGGTTGACATC381GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTTGCTACGATAAAGGTGG
EST484776 GVN Medicago truncatula cDNA clone pGVN-71M12 5' end, mRNA sequence.
BG583034.1:642-666
GCCAATCCCGACGCTATTGTGGTTGACATC642GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
s13dNF10B10VI089_399741 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence.
CX517361.1:325-349
GCCAATCCCGACGCTATTGTGGTTGACATC325GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
s13dNF54F06VI059_444234 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence.
CX520091.1:325-349
GCCAATCCCGACGCTATTGTGGTTGACATC325GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
s13dNF44F12GS103_466318 Germinating Seed Medicago truncatula cDNA, mRNA sequence.
CX541508.1:149-173
GCCAATCCCGACGCTATTGTGGTTGACATC149GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
JS1AI94JG Salt stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA clone JS1AI94, mRNA sequence.
EX658142.1:781-805
GCAAATCCAGATGCTATTGTTGTTGATATA781GATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAATGTGG
JS3BF01JG Heat stressed Fragaria vesca (strain Hawaii-4) cDNA library Fragaria vesca cDNA clone JS3BF01, mRNA sequence.
EX669742.1:105-129
GCAAATCCAGATGCTATTGTTGTTGATATA105GATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAAGGTGG
MERIP0004H01.B MeriP Pisum sativum Shoot apical meristem ESTs Pisum sativum cDNA clone MERIP0004H01.B, mRNA sequence.
FG530220.1:272-296
GCTAATCCTGACGCGATCGTGGTTGACATT272GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCCACTATAAAGGTGG
CaF1_JIE_11_A_08 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. JG-62) wilt Cicer arietinum cDNA clone CaF1_JIE_11_A_08, mRNA sequence.
GR913096.1:185-209
GCTAATCCTGACTCTGTTGTGGTTGACATC185GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
CaF1_JIE_19_E_10 Early immune responsive suppression subtracted cDNA libraries of Chickpea (Cicer arietinum cv. JG-62) wilt Cicer arietinum cDNA clone CaF1_JIE_19_E_10, mRNA sequence.
GR913606.1:186-210
GCTAATCCTGACTCTGTTGTGGTTGACATC186GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
METC733TF JCVI-MT3 Medicago truncatula cDNA 5', mRNA sequence.
GT138210.1:405-429
GCCAATCCCGACGCTATTGTGGTTGACATC405GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
KGRH2190 Rosehip CDNA library Rosa virginiana cDNA 3' similar to acetolactate synthase, mRNA sequence.
JZ193050.1:258-282
GCAAATCCAGATGCTATTGTTGTTGACATT258GATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAAGGTGG
TSA: Pisum sativum Ps_contig_mira-ass_7989 mRNA sequence.
JI904795.1:829-853
GCTAATCCTGACGCGATCGTGGTTGACATT829GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCCACTATAAAGGTGG
TSA: Pisum sativum contig09246.PisaPYK9 mRNA sequence.
JR959893.1:837-861
GCTAATCCTGACGCAATCGTGGTTGACATT837GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCCACTATAAAGGTGG
MBEAS52TF mth2 Medicago truncatula genomic clone 15J7, genomic survey sequence.
CG923951.1:306-330
GCCAATCCCGACGCTATTGTGGTTGACATC306GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
AAS, Lupinus angustifolius 83A:476 Lupinus angustifolius 83A:476 genomic intron sequences Lupinus angustifolius genomic, genomic survey sequence.
DU723420.1:1-25
1GATGGTGATGGAAGTTTTATGATGAATGTTCAAGAGCTAGCCACCATAAGGGTGG
CAH1-61P13TR CAA1Ba Cicer arietinum genomic clone CAH1-61P13, genomic survey sequence.
EI879577.1:461-485
GCTAATCCTGACTCTGTTGTGGTTGACATC461GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
Medicago truncatula clone mth2-15j7, complete sequence.
AC129091.19:299-323
GCCAATCCCGACGCTATTGTGGTTGACATC299GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
Medicago truncatula chromosome 2 clone mth2-78b21, complete sequence.
AC157507.2:98258-98282
GCCAATCCCGACGCTATTGTGGTTGACATC98258GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAATTGGCTACTATCAAGGTGG
Lotus japonicus genomic DNA, chromosome 6, clone: LjT04E21, TM0336.
AP009668.1:93762-93786
GCTAACCCCGGTGATGTTGTGGTTGACATC93762GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCCACTATAAAAGTGG
Lotus japonicus B-129 DNA, chromosome 6, complete sequence.
AP022634.1:64840595-64840619
GCTAACCCCGGTGATGTTGTGGTTGACATC64840595GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCCACTATAAAAGTGG
Cicer arietinum chromosome Ca1.
CP039331.1:2269299-2269323
GCTAATCCTGACTCTGTTGTGGTTGACATC2269299GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
Cicer arietinum chromosome Ca1.
CP040766.1:2269209-2269233
GCTAATCCTGACTCTGTTGTGGTTGACATC2269209GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCTACAATAAAGGTAG
Trifolium repens isolate ACLI19 chromosome 02_Occ.
CP125838.1:2851376-2851400
GCTAATCCTGGCGCTATTGTGGTTGACATC2851376GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTTGCCACTATAAAGGTGG
Trifolium repens isolate ACLI19 chromosome 02_Pall.
CP125839.1:3237950-3237974
GCTAATCCTGACGCTATCGTGGTTGACATC3237950GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTTGCCACTATAAAGGTGG
Fragaria x ananassa cultivar Benihoppe chromosome 28.
CP139748.1:6030536-6030560
GCAAATCCAGATGCTATTGTCGTTGATATA6030536GATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAAGGTGG
Fragaria x ananassa cultivar Benihoppe chromosome 26.
CP139750.1:6892225-6892249
GCAAATCCAGATGCTATTGTTGTTGATATA6892225GATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAAGGTGG
Potentilla anserina genome assembly, chromosome: 5.
OW176985.1:12243314-12243338
GCATGTCCAGATGCTATTGTTGTCGACATT12243314GATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCGACAATCAAGGTGG
Medicago arabica genome assembly, chromosome: 8.
OX326971.1:4184532-4184556
GCGAATCCTGACGCTATTGTGGTTGACATC4184532GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGTTGGCTACTATCAAGGTGG
Trifolium subterraneum genome assembly, chromosome: 2.
OX637462.1:3602185-3602209
GCTAATCCTGATGCTATTGTGGTTGACATC3602185GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTTGCTACTATAAAGGTGG
Comarum palustre genome assembly, chromosome: 10.
OX637581.1:8262666-8262690
GCATATCCAGATGCAATTGTTGTTGACATT8262666GATGGTGATGGAAGTTTTATGATGAATGTCCAAGAATTGGCAACAATCAAGGTGG
Medicago lupulina genome assembly, chromosome: 1.
OY283139.1:3933399-3933423
GCGAATCCCGACGCTATTGTGGTTGACATC3933399GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGTTGGCTACTATCAAGGTGG
Berberis vulgaris genome assembly, chromosome: 4.
OY747127.1:16812725-16812749
GCAAATCCGGACGCTGTTGTTGTGGACATC16812725GATGGTGATGGAAGTTTTATGATGAATGTTCAAGAATTGGCGACTATTCGGGTGG
Lathyrus sativus genome assembly, chromosome: 1.
OZ012735.1:27245434-27245458
GCTAATCCTGACGCTATCGTGGTTGACATT27245434GATGGTGATGGAAGTTTTATGATGAATGTTCAGGAGCTGGCCACTATAAAGGTGG
EST1179074 Aquilegia cDNA library Aquilegia formosa x Aquilegia pubescens cDNA clone CO1VU76, mRNA sequence.
DT745225.1:572-596
CCACCCGTATTGTAGCCAACTCTTGGACAT572TCATCATAAAACTTCCATCACCATCTATGTCTACAACGATAGCATCAGGATGAGC
Lotus japonicus cDNA, clone: LjFL3-021-CF04.r0, 3'-end sequence.
FS351748.1:564-588
CCACTTTTATAGTGGCCAGCTCCTGAACAT564TCATCATAAAACTTCCATCACCATCGATGTCAACCACAACATCACCGGGGTTAGC
Lotus japonicus cDNA, clone: LjFL3-026-BF07.r0, 3'-end sequence.
FS353290.1:564-588
CCACTTTTATAGTGGCCAGCTCCTGAACAT564TCATCATAAAACTTCCATCACCATCGATGTCAACCACAACATCACCGGGGTTAGC
Lotus japonicus cDNA, clone: LjFL3-040-BG04.r0, 3'-end sequence.
FS357698.1:526-550
CCACTTTTATAGTGGCCAGCTCCTGAACAT526TCATCATAAAACTTCCATCACCATCGATGTCAACCACAACATCACCGGGGTTAGC
METC733TR JCVI-MT3 Medicago truncatula cDNA 3', mRNA sequence.
GT142727.1:593-617
CCACCTTGATAGTAGCCAATTCCTGAACAT593TCATCATAAAACTTCCATCACCATCGATGTCAACCACAATAGCGTCGGGATTGGC
TSA: Lens culinaris contig08645.Lecu mRNA sequence.
JI854900.1:551-575
CCACCTTTATAGTGGCCAGCTCCTGAACAT551TCATCATAAAACTTCCATCACCATCGATGTCAACCACGATAGCGTCTGGATTAGC
TP_ABb0018G02.r TP_ABb Trifolium pratense genomic clone TP_ABb0018G02 3', genomic survey sequence.
HR263819.1:335-359
CCACCTTTATCGTAGCAAGCTCCTGAACAT335TCATCATAAAACTTCCATCACCATCGATGTCAACCACAATAGCGTCAGGATTAGC
TP_ABb0024N02.r TP_ABb Trifolium pratense genomic clone TP_ABb0024N02 3', genomic survey sequence.
HR268296.1:333-357
CCACCTTTATCGTAGCAAGCTCCTGAACAT333TCATCATAAAACTTCCATCACCATCGATGTCAACCACAATAGCGTCAGGATTAGC
ACCGBa087P13.F ACCGBa Aquilegia coerulea genomic 5', genomic survey sequence.
JS598655.1:214-238
CCACCCGTATTGTAGCCAACTCTTGGACAT214TCATCATAAAACTTCCATCACCATCTATGTCTACAACAATACCATCAGGATGACC
ACCGBa005H21.F ACCGBa Aquilegia coerulea genomic 5', genomic survey sequence.
JS629998.1:204-228
CCACCCGTATTGTAGCCAACTCTTGGACAT204TCATCATAAAACTTCCATCACCATCTATGTCTACAACGATAGCATCAGGATGAGC
ACCGBa105L13.F ACCGBa Aquilegia coerulea genomic 5', genomic survey sequence.
JS642745.1:187-211
CCACCCGTATTGTAGCCAACTCTTGGACAT187TCATCATAAAACTTCCATCACCATCTATGTCTACAACGATAGCATCAGGATGAGC
Fragaria x ananassa cultivar Benihoppe chromosome 27.
CP139749.1:7014470-7014494
CCACCTTGATTGTTGCCAATTCTTGGACAT7014470TCATCATAAAACTTCCATCACCATCTATATCAACAACAATAGCATCTGGATTTGC
Geum urbanum genome assembly, chromosome: 15.
OX327011.1:29098392-29098416
CCACCTTGATAGTTGCCAATTCCTGAACAT29098392TCATCATAAAACTTCCATCACCATCGATGTCGACAACAATGGCATCGGGACATGC
Geum urbanum genome assembly, chromosome: 17.
OX327013.1:28725863-28725887
CCACCTTGATAGTTGCCAATTCCTGAACAT28725863TCATCATAAAACTTCCATCACCATCAATGTCGACAACAATGGCATCTGGACATGC
Ilex aquifolium genome assembly, chromosome: 1.
OX637391.1:35688173-35688197
CCACTCGAATAGTAGCTAACTCTTGAACAT35688173TCATCATAAAACTTCCATCACCATCAATGTCTACCACAACTGCATCAGGTCTTGC
Comarum palustre genome assembly, chromosome: 8.
OX637579.1:718034-718058
CCACCTTGATTGTTGCCAATTCTTGGACAT718034TCATCATAAAACTTCCATCACCATCTATGTCAACAACAATTGTATCTGGATTTGC
Trifolium fragiferum genome assembly, chromosome: 7.
OX940795.1:37634229-37634253
CCACCTTTATAGTGGCAAGCTCCTGAACGT37634229TCATCATAAAACTTCCATCACCATCGATGTCAACCACAATAGCGTCAGGATTAGC
Rosa rugosa genome assembly, chromosome: 4.
OY288194.1:37354947-37354971
CCACCTTGATTGTTGCCAATTCTTGGACAT37354947TCATCATAAAACTTCCATCACCATCAATGTCGACAACAATAGCATCTGGATTTGC
Berberis vulgaris genome assembly, chromosome: 13.
OY747136.1:58126247-58126271
AGAGCATGATAGTCACCAATTCTTGAACGT58126247TCATCATAAAACTTCCATCACCATCGATGTCCACAACAACAGCATCGGGATTCGC
Euonymus europaeus genome assembly, chromosome: 6.
OY756962.1:3166469-3166493
CCACTCTTATAGTGGCCAACTCCTGCAAGT3166469TCATCATAAAACTTCCATCACCATCAACGTCAACCACGATCGAATCCGGGTTTGC
Potentilla sterilis genome assembly, chromosome: 7.
OY821760.1:34356079-34356103
CCACCTTAATTGTTGCCAATTCTTGGACAT34356079TCATCATAAAACTTCCATCACCATCAATGTCAACAACAATGGCATCTGGATATGC
Potentilla sterilis genome assembly, chromosome: 12.
OY821765.1:28479343-28479367
CCACCTTGATTGTTGCCAATTCTTGGACAT28479343TCATCATAAAACTTCCATCACCATCAATGTCAACAACAATGGCATCTGGACATGC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGGTGATGGAAGTTTTATGATGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGGTGATGGAAGTTTTATGATGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.038 | 1.029 | search_plus_done; http://172.18.8.135:50400/match?q=GATGGTGATGGAAGTTTTATGATGA&k=0&no_gap=0&offset=0&limit=50
1.733 | 0.695 | search_minus_done; http://172.18.8.135:50400/match?q=TCATCATAAAACTTCCATCACCATC&k=0&no_gap=0&offset=0&limit=10
1.747 | 0.014 | cgi_end;

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