GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-07 10:45:34, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum melongena mRNA, clone: SmFL10M02, 5'end.
FS073315.1:609-628
GTCTATTTCTCTTACGATCTACCCAAAGGT609GATGGTGGTTCTGCGGTATCAGGATCCTATCTCCAAGA
Solanum melongena mRNA, clone: AE002M13, 3'end, expressed in ovary at anthesis.
FS000989.1:360-379
GACATCACCTCTTCTTGGAGATAGGATCCT360GATACCGCAGAACCACCATCACCTTTGGGTAGATCGTAAGAGAAATAGAC
Solanum melongena mRNA, clone: CPA01P06, 3'end, expressed in ovary at 24h after anthesis.
FS015301.1:386-405
GACATCACCTCTTCTTGGAGATAGGATCCT386GATACCGCAGAACCACCATCACCTTTGGGTAGATCGTAAGAGAAATAGAC
Solanum melongena mRNA, clone: PED04B02, 3'end, expressed in peduncle at anthesis.
FS035138.1:384-403
GACATCACCTCTTCTTGGAGATAGGATCCT384GATACCGCAGAACCACCATCACCTTTGGGTAGATCGTAAGAGAAATAGAC
Solanum melongena mRNA, clone: SmFL10M02, 3'end.
FS073316.1:331-350
GACATCACCTCTTCTTGGAGATAGGATCCT331GATACCGCAGAACCACCATCACCTTTGGGTAGATCGTAAGAGAAATAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGGTGGTTCTGCGGTATC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGGTGGTTCTGCGGTATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.183 | 0.174 | search_plus_done; http://172.18.8.135:50400/match?q=GATGGTGGTTCTGCGGTATC&k=0&no_gap=0&offset=0&limit=50
0.544 | 0.361 | search_minus_done; http://172.18.8.135:50400/match?q=GATACCGCAGAACCACCATC&k=0&no_gap=0&offset=0&limit=49
0.547 | 0.003 | cgi_end;

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