GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:18:49, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BNDH5DCT_UP_013_B06_26JAN2004_046 Brassica napus BNDH5DCT Brassica napus cDNA 5', mRNA sequence.
CN727395.1:126-145
GATTCAATATGAGACCCGCACTCGCCTTCT126GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
38RDBRM_UP_031_C02_12JUL2004_012 Brassica rapa 38RDBRM Brassica rapa cDNA 5', mRNA sequence.
CX268136.1:164-183
GATTCAATATGAGACCCGCACTCGCCTTCT164GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
39RDBRT_UP_045_D02_22JUL2004_010 Brassica rapa 39RDBRT Brassica rapa cDNA 5', mRNA sequence.
CX272802.1:121-140
GATTCAATATGAGACCCGCACTCGCCTTCT121GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
53COT5_T3_008_C01_19JUL2004_011 Brassica napus 36hr germinating seed library 53COT5 Brassica napus cDNA 5', mRNA sequence.
DY020612.1:130-149
GATTCAATATGAGACCCGCACTCGCCTTCT130GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
22FGYLU_UP_002_G05_01FEB2004_035 Brassica napus 22FGYLU Brassica napus cDNA 5', mRNA sequence.
DY028532.1:164-183
GATTCAATATGAGACCCGCACTCGCCTTCT164GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
37RDBRH_UP_032_B01_05JUL2004_013 Brassica rapa 37RDBRH Brassica rapa cDNA 5', mRNA sequence.
EE524683.1:164-183
GATTCAATATGAGACCCGCACTCGCCTTCT164GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BNSCS3CT_UP_201_C11_13MAY2007_091 Brassica napus BNSCS3CT Brassica napus cDNA 5', mRNA sequence.
EV052746.1:164-183
GATTCAATATGAGACCCGCACTCGCCTTCT164GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
0110158 Brassica napus Senescent leaves Brassica napus cDNA, mRNA sequence.
EV104846.1:163-182
GATTCAATATGAGACCCGCACTCGCCTTCT163GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
0149288 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV170129.1:180-199
GATTCAATATGAGACCCGCACTCGCCTTCT180GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR026895 floral bud cDNA library KBFL Brassica rapa subsp. pekinensis cDNA clone KBFL-101D12 5', mRNA sequence.
EX042251.1:136-155
GATTCAATATGAGACCCGCACTCGCCTTCT136GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR048212 etiolated mature leaf cDNA library KBLW Brassica rapa subsp. pekinensis cDNA clone KBLW-28G01 5', mRNA sequence.
EX063568.1:36-55
GATTCAATATGAGACCCGCACTCGCCTTCT36GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR072217 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-005B10 5', mRNA sequence.
EX085927.1:163-182
GATTCAATATGAGACCCGCACTCGCCTTCT163GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR075598 flower cDNA library KFFB Brassica rapa subsp. pekinensis cDNA clone KFFB-060B11 5', mRNA sequence.
EX089308.1:130-149
GATTCAATATGAGACCCGCACTCGCCTTCT130GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR084343 infected leaf cDNA library KFPC Brassica rapa subsp. pekinensis cDNA clone KFPC-059D10 5', mRNA sequence.
EX098053.1:158-177
GATTCAATATGAGACCCGCACTCGCCTTCT158GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR090911 seed and seedling cDNA library KFSD Brassica rapa subsp. pekinensis cDNA clone KFSD-035E12 5', mRNA sequence.
EX104621.1:169-188
GATTCAATATGAGACCCGCACTCGCCTTCT169GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR096773 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-061H05 5', mRNA sequence.
EX110483.1:163-182
GATTCAATATGAGACCCGCACTCGCCTTCT163GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR100514 whole plant cDNA library KFYP Brassica rapa subsp. pekinensis cDNA clone KFYP-113H05 5', mRNA sequence.
EX114224.1:163-182
GATTCAATATGAGACCCGCACTCGCCTTCT163GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR106911 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-17C08 5', mRNA sequence.
EX123081.1:96-115
GATTCAATATGAGACCCGCACTCGCCTTCT96GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR107502 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-26E04 5', mRNA sequence.
EX123672.1:96-115
GATTCAATATGAGACCCGCACTCGCCTTCT96GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR107819 mature green leaf cDNA library KHLM Brassica rapa subsp. pekinensis cDNA clone KHLM-31C04 5', mRNA sequence.
EX123989.1:96-115
GATTCAATATGAGACCCGCACTCGCCTTCT96GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
BR109911 etiolated mature leaf cDNA library KHLW Brassica rapa subsp. pekinensis cDNA clone KHLW-08G02 5', mRNA sequence.
EX126081.1:139-158
GATTCAATATGAGACCCGCACTCGCCTTCT139GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
0239774 B. juncea infected with A. candida 2VRR Brassica juncea/Albugo candida mixed genomic library cDNA, mRNA sequence.
HO929480.1:176-195
GATTCAATATGAGACCCGCACTCGCCTTCT176GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:20871830-20871849
GATTCAATATGAGACCCGCACTCGCCTTCT20871830GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
Brassica rapa genome, scaffold: A01.
LR031571.1:26025995-26026014
GATTCAATATGAGACCCGCACTCGCCTTCT26025995GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:26545920-26545939
GATTCAATATGAGACCCGCACTCGCCTTCT26545920GATGTCACTGTTTCGGATCTTCATCAATCAGGACGACGACGACGACGATA
0149213 Brassica napus Etiolated seedlings (Uni-ZAP) Brassica napus cDNA, mRNA sequence.
EV170095.1:283-302
TATCGTCGTCGTCGTCGTCCTGATTGATGA283AGATCCGAAACAGTGACATCAGAAGGCGAGTGCGGGTCTCATATTGAATC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_15640.
FX706807.1:992-1011
TATCGTCGTCGTCGTCGTCCTGATTGATGA992AGATCCGAAACAGTGACATCAGAAGGCGAGTGCGGGTCTCATATTGAATC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATGTCACTGTTTCGGATCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGTCACTGTTTCGGATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.760 | 1.751 | search_plus_done; http://172.18.8.135:50400/match?q=GATGTCACTGTTTCGGATCT&k=0&no_gap=0&offset=0&limit=50
1.938 | 0.178 | search_minus_done; http://172.18.8.135:50400/match?q=AGATCCGAAACAGTGACATC&k=0&no_gap=0&offset=0&limit=25
1.939 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).