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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:38:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Apodemus sylvaticus genome assembly, chromosome: 19.
OX359316.1:59912810-59912827
AACCCATTCATCTATACTTTGAGGAACAAG59912810GATGTGAAGGCTGCCCTGAGGAGGGCACTAACAAAGGAGTTTTGGGTC
Peromyscus eremicus genome assembly, chromosome: 16_21.
OX460410.1:384524-384541
AACCCATTCATCTATACTTTGAGAAACAAG384524GATGTGAAGGCTGCCCTGAGGAGGGCACTGACAAAAGAGTTTTGGGTC
Peromyscus eremicus genome assembly, chromosome: 16_21.
OX460482.1:416587-416604
AACCCATTCATCTATACTTTGAGAAACAAG416587GATGTGAAGGCTGCCCTGAGGAGGGCACTGACGAAAGAGTTTTGGGTC
Capricornis sumatraensis isolate serow.1 chromosome 15.
CP135641.1:83867686-83867703
CAGTTGCTCTTTTATTGCGGCATGACCGAT83867686GATGTGAAGGCTGCCCTGAGCAGGTCTAACAGAAAAGGCTCCTTGGAG
Lutra lutra genome assembly, chromosome: 2.
LR738404.1:293607-293624
AATCCATTTATCTATACACTGAGGAACAAG293607GATGTGAAGGCTGCCCTGAGAAGAGCACTGACCAAGGAGTTTTGGGTC
Cervus elaphus genome assembly, chromosome: 11.
OU343088.1:55194618-55194635
AACCCCTCCCTCCTCCTCACCCTGACCTCA55194618GATGTGAAGGCTGCCCTGGGAAGGGTCCCCTGGGGGACAGGGTGTAGG
Meles meles genome assembly, chromosome: 20.
OV277461.1:33737560-33737577
CATGTCAGGATGTTGTACGTTAAGGAAGCA33737560GATGTGAAGGCTGCCCTGAAATGACGATGGGGAGGCATCATGTAGTTT
Rangifer tarandus platyrhyncus genome assembly, chromosome: 21.
OX459957.2:54227865-54227882
GACCGGAAGTGACTGGCCGGACAGCCGCAG54227865GATGTGAAGGCTGCCCTGCAGGTGGCGCTCAAGGCGCCCACGCAGGTG
Eptesicus nilssonii genome assembly, chromosome: 5.
OX621284.1:107410258-107410275
ATACCAACATCCTTATCAGCTTTTACGTGC107410258GATGTGAAGGCTGCCCTGGCTCAGTAAGACCTCCCACGCAGTTTCTGA
Martes martes genome assembly, chromosome: 2.
OY734064.1:391708-391725
AATCCATTTATCTATACACTGAGGAACAAG391708GATGTGAAGGCTGCCCTGAGAAGGGCACTGACCAAGGAGTTTTGGATC
Martes martes genome assembly, chromosome: 2.
OY734064.1:439577-439594
AATCCATTTATCTATACACTGAGGAACAAG439577GATGTGAAGGCTGCCCTGAGAAGGGCACTGACCAAGGAGTTTTGGATC
Muntiacus reevesi genome assembly, chromosome: 3.
OZ005626.1:54417431-54417448
AACCCCTCCCTCCTCCTCACCCTGACCTCA54417431GATGTGAAGGCTGCCCTGGGAAGGGTCCCCTGGGGGACAGGGTGTAGG
Streptopelia turtur genome assembly, chromosome: 3.
LR594553.2:11398946-11398963
CCACGTTATTCCCTATATTGGTCTCCCTGT11398946GATGTGAAGGCTGCCCTGCCTTCACTCCTGGAAAACACCATGCCACCC
Geotrypetes seraphini genome assembly, chromosome: 3.
LR699148.1:226811570-226811587
CTGAAGGATGAAATGGTAGGAGTGAGAGTG226811570GATGTGAAGGCTGCCCTGGCGGAGCTCCGTGCGGATGTGGGGGAGTTG
Geotrypetes seraphini genome assembly, chromosome: 5.
LR699150.1:92124831-92124848
CTGAAGGATGAAATGGTAGGAGTGAGAGTG92124831GATGTGAAGGCTGCCCTGGCGGAGCTCCGTGCGGATGTGGGGGAGTTG
Geotrypetes seraphini genome assembly, chromosome: 5.
LR699150.1:143125492-143125509
CTGAAGGATGAAATGGTAGGAGTGAGAGTG143125492GATGTGAAGGCTGCCCTGGCGGAGCTCCGTGCGGATGTGGGGGAGTTG
Geotrypetes seraphini genome assembly, chromosome: 14.
LR699159.1:45000173-45000190
CTGAAGGATGAAATGGTAGGAGTGAGAGTG45000173GATGTGAAGGCTGCCCTGGCGGAGCTCCGTGCGGATGTGGGGGAGTTG
Meleagris gallopavo genome assembly, chromosome: 7.
OW982259.1:1520954-1520971
GAGATGAAAGAGCCGGCAGTGCTCTAAAGG1520954GATGTGAAGGCTGCCCTGTCATTCACGTTTTCTGGGAGCTTGTTCCTG
Meleagris gallopavo genome assembly, chromosome: 7.
OW982298.1:1999623-1999640
GAGATGAAAGAGCCGGCAGTGCTCTAAAGG1999623GATGTGAAGGCTGCCCTGTCATTCACGTTTTCTGGGAGCTTGTTCCTG
Symphodus melops genome assembly, chromosome: 18.
OX393542.1:3438199-3438216
TCAAACGATCAGGAAGTGTAGGGGTGGCTG3438199GATGTGAAGGCTGCCCTGACTTTGGAGGATTCCTTGACTTTGGGTCGA
Tetrao urogallus genome assembly, chromosome: 8.
OX596302.1:28946084-28946101
GAGATGAAAGAGCCGGCAGTGCTCTAAAGG28946084GATGTGAAGGCTGCCCTGTCATTCATGTTTTCTGGGAGCTTGTTCCTG
Labrus mixtus genome assembly, chromosome: 16.
OY757299.1:9023035-9023052
TCAAACGATCAGGAAGTGTGGGGGTGACTG9023035GATGTGAAGGCTGCCCTGACTTTGGAGGATTCCTTGACTTTGGGTCGA
Labrus bergylta genome assembly, chromosome: 19.
OZ005727.1:8145961-8145978
TCAAACGATCAGGAAGTGTGGGGGTGACTG8145961GATGTGAAGGCTGCCCTGACTTTGGAGGATTCCTTTGACTTTGGGTCG
MAG: Deltaproteobacteria bacterium isolate bin63 chromosome.
CP070689.1:2829590-2829607
GAATACGACAATGGTATCGGGGAACAGGAA2829590GATGTGAAGGCTGCCCTGCACTACCTTGCCCAGAGAGGGAAGAAGGTC
Hordeum vulgare subsp. vulgare cultivar Morex clone BAC 0042C05, *** SEQUENCING IN PROGRESS ***, 30 unordered pieces.
AC259953.1:75104-75121
TCTCTCCGGTGGTTTATGTGTGTCTACAGT75104GATGTGAAGGCTGCCCTGCGTACGGAGGTACGGCGCCAATGGCTGGCA
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-165A4.
CT989252.4:130073-130090
GCCCATTACTTGACTTGATAATTTGGGGGA130073GATGTGAAGGCTGCCCTGGCCAAGGTTTTTTAGACATGTCGAAAGGAG
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone WTSI_1061-26K19.
FO082408.2:23319-23336
GCCCATTACTTGACTTGATAATTTGGGGGA23319GATGTGAAGGCTGCCCTGGCCAAGGTTTTTTAGACATGTCGAAAGGAG
Pig DNA sequence *** SEQUENCING IN PROGRESS *** from clone CH242-89J9.
FP340591.2:133493-133510
GCCCATTACTTGACTTGATAATTTGGGGGA133493GATGTGAAGGCTGCCCTGGCCAAGGTTTTTTAGACATGTCGAAAGGAG
Aegilops umbellulata cultivar TA1851 chromosome 1U.
CP136054.1:158791116-158791133
GACAACCTCTCGTTTATGTGTGTCTACAGT158791116GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGTCACGGCACGG
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR828087.1:131557713-131557730
TCTCTCCGGTGGTTTATGTGTGTCTACAGT131557713GATGTGAAGGCTGCCCTGCGTACGGAGGTACGGCGCCAATGGCTGGCA
Triticum turgidum subsp. durum genome assembly, chromosome: 1B.
LT934112.1:185546147-185546164
TCTCTCCGGTGGTTTATGAGCGTCTACAGT185546147GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGTCACGGTCAGA
Avena insularis genome assembly, chromosome: 7C.
OU342344.1:164847937-164847954
CGCGAGTGCGTGCGGCAGCAACTGGTCGCG164847937GATGTGAAGGCTGCCCTGTCGCTGGTGTGACTCCATCGGCCAGATGTG
Avena sativa genome assembly, chromosome: 7C.
OU342391.1:166197793-166197810
CGCGAGTGCGTGCGGCAGCAACTGGTCGCG166197793GATGTGAAGGCTGCCCTGTCGCTGGTGTGACTCCATCGGCCAGATGTG
Triticum aestivum genome assembly, chromosome: 1D.
OV100739.1:140945534-140945551
TCTCTCCGGTGGTTTATGTGTGTCTACAGT140945534GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGTCACGGCGCGG
Avena sativa genome assembly, chromosome: 14.
OV702292.1:179290732-179290749
CGCGAGTGCGTGCGGCAGCAACTGGTCGCG179290732GATGTGAAGGCTGCCCTGTCGCTGGTGTGACTCCATCGGCCAGATGTG
Triticum aestivum genome assembly, chromosome: 1D.
OW530312.1:140945534-140945551
TCTCTCCGGTGGTTTATGTGTGTCTACAGT140945534GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGTCACGGCGCGG
Aegilops speltoides subsp. speltoides genome assembly, chromosome: 1B.
OX082597.1:124157408-124157425
TCTCTCCGGTGGTTTATGAGCGTCTACAGT124157408GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGTCACGGTCAGA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 1H.
OX459970.1:137701833-137701850
TCTCTCCGGTGGTTTATGTGTGTCTACAGT137701833GATGTGAAGGCTGCCCTGCGTACGGAGGTACGGCGCCAATGGCTGGCA
Hordeum vulgare subsp. spontaneum genome assembly, chromosome: 1H.
OX460026.1:172765419-172765436
TCTCTCCGGTGGTTTATGTGTGTCTACAGT172765419GATGTGAAGGCTGCCCTGCGTACGGAGGTACGGCGCCAATGGCTGGCA
Hordeum bulbosum genome assembly, chromosome: 1H_3.
OY737474.1:136424178-136424195
TCTTTGCGGTGGTTTATGTGTGTCTACAGT136424178GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGGCACGGTCAAA
Hordeum bulbosum genome assembly, chromosome: 1H_2.
OY737496.1:137174887-137174904
TCTTTGCGGTGGTTTATGTGTGTCTACAGT137174887GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGGCACGGTCAGA
Hordeum bulbosum genome assembly, chromosome: 1H_3.
OY737625.1:136534735-136534752
TCTTTGCGGTGGTTTATGTGTGTCTACAGT136534735GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGGCACGGTCAGA
Hordeum bulbosum genome assembly, chromosome: 1H_2.
OY737647.1:127081337-127081354
TCTTTGCGGTGGTTTATGTGTGTCTACAGT127081337GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGGCACGGTCAGA
Hordeum bulbosum genome assembly, chromosome: 1H_3.
OY737880.1:128521832-128521849
TCTTTGCGGTGGTTTATGTGTGTCTACAGT128521832GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGGCACGGTCAGA
Triticum timopheevii genome assembly, chromosome: 1At.
OY997261.1:184685812-184685829
TCTCTCCGGTGGTTTATCTGTGTCTACAGT184685812GATGTGAAGGCTGCCCTGCGTACGGAGCCAATGGCTGTCACGGCGCGG
Sphingobium sp. YBL2, complete genome.
CP010954.1:1653265-1653282
CCGCCCGAGCTCAGCCCCGCAGAATGGCAC1653265GATGTGAAGGCTGCCCTGATCGCGGTGGCCGATTGCGGCTGCGGTGAT
Acetobacter tropicalis strain BDGP1 chromosome, complete genome.
CP022699.1:1060879-1060896
GACCAGATTACCCGCTATGCCCGTGCCGCA1060879GATGTGAAGGCTGCCCTGCGCATTCTGGCGTTGCTGGTGCCGGAATTC
Serratia ureilytica strain T6 chromosome, complete genome.
CP071320.1:1945915-1945932
CTGCATGACGTCTGCGGCATCGTCTTCATT1945915GATGTGAAGGCTGCCCTGGTAGATCAACAGCATTTGTTCGCGATGGGG
Pterostichus madidus genome assembly, chromosome: 8.
OU452308.1:7763358-7763375
AGCAGGAACTAAGAAAGGAACGCCCATAGA7763358GATGTGAAGGCTGCCCTGTTGCTAATGATGTGATGATGGAATTTTTCA
Sciurus carolinensis genome assembly, chromosome: 2.
LR738591.1:96314694-96314711
CTACCACCACCAAGGCCTTCTCCCAGGTCC96314694CAGGGCAGCCTTCACATCTGTCAGGGCCTCAGAAACAGGGAGGCTGAG
Sus scrofa scrofa breed NS chromosome 7.
CP071558.1:121379260-121379277
CTCCTTTCGACATGTCTAAAAAACCTTGGC121379260CAGGGCAGCCTTCACATCTCCCCCAAATTATCAAGTCAAGTAATGGGC
Geotrypetes seraphini genome assembly, chromosome: 1.
LR699146.1:351957393-351957410
CAACTCCCCCACATCCGCACGGAGCTCCGC351957393CAGGGCAGCCTTCACATCCACTCTCACTCCTACCATTTCATCCTTCAG
uncultured Gammaproteobacteria bacterium genome assembly, chromosome: 1.
OY282353.1:3002019-3002036
ACGATATATCGCGGGGACGTGGTCATCGAC3002019CAGGGCAGCCTTCACATCCTCGGCGACACCGTGACCATCCGGTTCGAC
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
HG994374.1:136428651-136428668
TGCCAGCCATTGGCGCCGTACCTCCGTACG136428651CAGGGCAGCCTTCACATCACTGTAGACACACATAAACCACCGGAGAGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
LR828094.1:152430194-152430211
TGCCAGCCATTGGCGCCGTACCTCCGTACG152430194CAGGGCAGCCTTCACATCACTGTAGACACACATAAACCACCGGAGAGA
Triticum aestivum genome assembly, chromosome: 1A.
LR865500.1:149991794-149991811
CCGCGCCGTGACAGCCATTGGCTCCGTACG149991794CAGGGCAGCCTTCACATCACTGTAGACACACATAAACCACCGGAGAGA
Triticum aestivum genome assembly, chromosome: 1A.
OU343169.1:160905487-160905504
CCGCGCCGTGACAGCCATTGGCTCCGTACG160905487CAGGGCAGCCTTCACATCACTGTAGACACACATAAACCACCGGAGAGA
Hordeum vulgare subsp. vulgare genome assembly, chromosome: 1H.
OX459902.1:159260823-159260840
TGCCAGCCATTGGCGCCGTACCTCCGTACG159260823CAGGGCAGCCTTCACATCACTGTAGACACACATAAACCACCGGAGAGA
Hordeum vulgare genome assembly, chromosome: 1H.
OX460124.1:162474527-162474544
TGCCAGCCATTGGCGCCGTACCTCCGTACG162474527CAGGGCAGCCTTCACATCACTGTAGACACACATAAACCACCGGAGAGA
Triticum aestivum genome assembly, chromosome: 1A.
OX637225.1:117877279-117877296
CCGCGCCGTGACAGCCATTGGCTCCGTACG117877279CAGGGCAGCCTTCACATCACTGTAGACACACATAAACCACCGGAGAGA
Hordeum bulbosum genome assembly, chromosome: 1H_4.
OY737481.1:144875679-144875696
TCTGACCGTGCCAGCCATTGGCTCCGTACG144875679CAGGGCAGCCTTCACATCAATGTAGACACACATAAACCACCGCAAAGA
Serratia marcescens SL267 DNA, complete genome.
AP024916.1:3043361-3043378
CCCCATCGCGAACAAATGCTGTTGATCTAC3043361CAGGGCAGCCTTCACATCAATGAAGACGATGCCGCAGACGTCATGCAG
Serratia sp. LS-1 chromosome, complete genome.
CP033504.1:2462280-2462297
CCCCATCGCGAACAAATGCTGTTGATCTAC2462280CAGGGCAGCCTTCACATCAATGAAGACGATGCCGCAGACGTCATGCAG
Rhodococcus koreensis strain R85 chromosome, complete genome.
CP070609.1:543824-543841
CACCAGGAGCGGGTCCACTCCCGCCGTTTC543824CAGGGCAGCCTTCACATCCGCGTCCAGCTTCATCAGACTCTTGTATAC
Sphingobium sp. YC-XJ3 chromosome, complete genome.
CP117471.1:4475185-4475202
ATCACCGCAGCCGCAATCGGCCACCGCGAT4475185CAGGGCAGCCTTCACATCGTGCCATTCTGCGGGGCTGAGCTCGGGCGG
Agriotes lineatus genome assembly, chromosome: 3.
OW679196.1:32594198-32594215
GATTTTGTCAAGCCCTTCAAAATGTTCAAT32594198CAGGGCAGCCTTCACATCCTCATCTGTTGAAAAGTTCTGGTGTGCAAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GATGTGAAGGCTGCCCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GATGTGAAGGCTGCCCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.248 | 0.239 | search_plus_done; http://172.18.8.135:50400/match?q=GATGTGAAGGCTGCCCTG&k=0&no_gap=0&offset=0&limit=50
0.404 | 0.156 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGGCAGCCTTCACATC&k=0&no_gap=0&offset=0&limit=1
0.415 | 0.011 | cgi_end;

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