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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 17:31:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

GQ02819.B7_G13 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02819_G13 5', mRNA sequence.
EX322580.1:246-265
TCTTTGGCAGAAGAAGAAGTTCGTCCTGAA246GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCTAACTCATCCAAACG
Cryptomeria japonica cDNA, clone: CFFL028_C22, 3'end sequence.
FY290277.1:105-124
TCATTGGCTGAAGAAGAAGTACCTCCTGAA105GATGTTGTTTTTCACAAGTTTTATATGGCAAAGAGCAGCTCATCAAAACG
Cryptomeria japonica cDNA, clone: CSFL025_D06, 3'end sequence.
FY780150.1:34-53
TTCATTGGCTGAAGAAGAAGTACCTCTGAA34GATGTTGTTTTTCACAAGTTTTATATGGCAAAGAGCAGCTCATCAAAACG
PCO0140.CR_A13 Pco01-Bark-Wounded-Norm (PCO01) Pinus contorta cDNA clone PCO0140_A13 3', mRNA sequence.
GT240809.1:814-833
TCTTTGGCAGAAGAAGAAGTTCGTCCCGAA814GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCCAACTCATCCAAACG
PCO021.CR_M05 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO021_M05 3', mRNA sequence.
GT258430.1:809-828
TCTTTGGCAGAAGAAGAAGTTCGTCCCGAA809GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCCAACTCATCCAAACG
PCO023.CR_G10 Pco02-Xylem-wounded-Norm (PCO02) Pinus contorta cDNA clone PCO023_G10 3', mRNA sequence.
GT259688.1:25-44
GCAGAAGAAGAAGTTCGTCCCGAA25GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCCAACTCATCCAAACG
TSA: Cryptomeria japonica mRNA, contig: CSFL025_D06, expressed in reproductive shoots.
FX347065.1:2875-2894
TCATTGGCTGAAGAAGAAGTACCTCCTGAA2875GATGTTGTTTTTCACAAGTTTTATATGGCAAAGAGCAGCTCATCAAAACG
Picea glauca clone GQ02819_G13 mRNA sequence.
BT105177.1:246-265
TCTTTGGCAGAAGAAGAAGTTCGTCCTGAA246GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCTAACTCATCCAAACG
Picea glauca clone GQ03514_D22 mRNA sequence.
BT114419.1:1835-1854
TCTTTGGCAGAAGAAGAAGTTCGTCCTGAA1835GATGTTGTTTTTCACAAGTTTTATTTGGCAAAGGCTAACTCATCCAAACG
Chamaecyparis hodginsii clone c10813_g1_i1 microsatellite sequence.
KY010838.1:89-108
TCATTGGCTGAAGAAGAAGTACCTCCTGAA89GATGTTGTTTTTCACAAGTTTTATATGGCAAAGAGCAGCTCGTCAAAACG
GQ02819.SP6_G13 GQ028 - Cambium / phloem scrappings (Normalized library) Picea glauca cDNA clone GQ02819_G13 3', mRNA sequence.
EX322940.1:719-738
CGTTTGGATGAGTTAGCCTTTGCCAAATAA719AACTTGTGAAAAACAACATCTTCAGGACGAACTTCTTCTTCTGCCAAAGA
GQ03514.SP6.r_D22 GQ035 - Needles - End of season Picea glauca cDNA clone GQ03514_D22 3', mRNA sequence.
GO365373.1:43-62
CGTTTGGATGAGTTAGCCTTTGCCAAATAA43AACTTGTGAAAAACAACATCTTCAGGACGAACTTCTTCTTCTGCCAAAGA
PBA0126.CR_F18 Pba01-Bark-wounded-Norm (PBA01) Pinus banksiana cDNA clone PBA0126_F18 3', mRNA sequence.
GW756139.1:53-72
CGTTTGGATGAGTTGGCCTTTGCCAAATAA53AACTTGTGAAAAACAACATCTTCGGGACGAACTTCTTCTTCTGCCAAAGA
TSA: Larix kaempferi PEMC22552.Lakaproemb mRNA sequence.
JR153034.1:388-407
CGTTTGGATGAGTTAGCTTTTGCCACATAA388AACTTGTGAAAAACAACATCTTCAGGACGAACATCTTCTTCTGCCAAAGA
Sphagnum tenellum genome assembly, chromosome: 15.
OY998156.1:1530793-1530812
CTTCTACTCTTCATGCTCTTTGTTTGGTAA1530793AACTTGTGAAAAACAACATCATCAGGAGCAACCTCACTTTCATCTAGGGC
Phallusia mammillata mRNA for extracellular matrix protein FRAS1 (Fras1-002 gene).
LR785266.1:6599-6618
TTAACCGCGATCCAAACGTTGGTCAACTTC6599AACTTGTGAAAAACAACATCGTTACCAATATTTCAGCGTCTAGGACACGA
Lacanobia oleracea genome assembly, chromosome: 21.
OX493406.1:8806747-8806766
TTAGACCAAGACATCATAAAACGAGTAATA8806747AACTTGTGAAAAACAACATCTTGCAGCAGTGTTCCGAGGCTCAATAATTT
Oxytorus armatus genome assembly, chromosome: 6.
OY253749.1:13369094-13369113
TCTCGAGAAATTATTCAATCCAACGATCTT13369094AACTTGTGAAAAACAACATCGGAATCGATTTAACTTCTGCGAAACATTAA

Data Export:

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