GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 19:06:12, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Cucumis melo subsp. agrestis EST, clone AI_22-A05-M13R.
AM715980.2:66-86
GCTCTTGCCCTGCCGCCAGCCTCTGACATC66GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
Cucumis melo subsp. melo EST, clone PS_18-D10-M13R.
AM717535.1:77-97
GCTCTTGCCCTGCCGCCAGCCTCTGACATC77GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
Cucumis melo subsp. agrestis EST, clone A_17-G02-M13R.
AM730099.1:46-66
GCTCTTGCCCTGCCGCCAGCCTCTGACATC46GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTACTTCTTCT
Cucumis melo subsp. melo EST, clone 15d_23-H01-M13R.
AM736620.2:4-24
ATC4GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
Cucumis melo subsp. melo EST, clone 46d_40-A03-M13R.
AM742727.2:45-65
GCTCTTGCCCTGCCGCCAGCCTCTGACATC45GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
EST11014122 CM-TEa library Cucumis melo cDNA clone TEa0002E12, mRNA sequence.
JG472409.1:9-29
CTGACATC9GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
EST11019897 CM-VEa library Cucumis melo cDNA clone VEa0011M22, mRNA sequence.
JG478184.1:4-24
ATC4GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
EST11036877 MNRP2 library Cucumis melo cDNA clone CA5YL22FM1, mRNA sequence.
JG495164.1:47-67
GCTCTTGCCCTGCCGCCAGCCTCTGACATC47GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
EST11051984 VFTP2 library Cucumis melo cDNA clone HA6YA13FM1, mRNA sequence.
JG510271.1:47-67
GCTCTTGCCCTGCCGCCAGCCTCTGACATC47GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
EST11056732 DFTP2 library Cucumis melo cDNA clone LA1YG05FM1, mRNA sequence.
JG515019.1:66-86
GCTCTTGCCCTGCCGCCAGCCTCTGACATC66GATTCCTTGGGCTTGTACCTCCAACTCGAGCCGATCGCTTCTTCTTCTTCT
EST11068284 VFLP2 library Cucumis melo cDNA clone GA48YA05FM1, mRNA sequence.
JG526571.1:25-45
GCCCTGCCGCCAGCCTCTGACATC25GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
EST11072993 VFLP2 library Cucumis melo cDNA clone GA35YL19FM1, mRNA sequence.
JG531280.1:47-67
GCTCTTGCCCTGCCGCCAGCCTCTGACATC47GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
Cucumis melo genomic scaffold, anchoredscaffold00014.
LN681823.1:2503979-2503999
GCTCTTGCCCTGCCGCCAGCCTCTGACATC2503979GATTCCTTGGGCTTGTACCTCCAACTCAAGCCGATCGCTTCTTCTTCTTCT
Cucumis melo isolate PI 511890 chromosome 3.
CP136101.1:28412490-28412510
AGAAGAAGAAGAAGCGATCGGCTTGAGTTG28412490GAGGTACAAGCCCAAGGAATCGATGTCAGAGGCTGGCGGCAGGGCAAGAGC
Cucumis melo genomic chromosome, chr_3.
LN713257.1:26883471-26883491
AGAAGAAGAAGAAGCGATCGGCTTGAGTTG26883471GAGGTACAAGCCCAAGGAATCGATGTCAGAGGCTGGCGGCAGGGCAAGAGC
Erebia pronoe genome assembly, chromosome: 2.
OZ220131.1:31628780-31628800
TGACAAATATAACAAGTTTGTTATGGAAAA31628780GAGGTACAAGCCCAAGGAATCAGAGAGGGAGGCACTGGGTTCAAATAGTCA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATTCCTTGGGCTTGTACCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATTCCTTGGGCTTGTACCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.984 | 0.975 | search_plus_done; http://172.18.8.135:50800/match?q=GATTCCTTGGGCTTGTACCTC&k=0&no_gap=0&offset=0&limit=50
1.116 | 0.132 | search_minus_done; http://172.18.8.135:50800/match?q=GAGGTACAAGCCCAAGGAATC&k=0&no_gap=0&offset=0&limit=37
1.118 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).