GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-20 13:17:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrH013F22R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH013F22, genomic survey sequence.
CW986864.1:342-361
GGCAAACGACAAAACCGCGTGGATCGTTGA342GATTGTGATCGAGGAGGTGCCGGAGACAGAACAGGTGATGAAGGGGCTTC
Brassica oleracea clone BOT01-36M16, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC240086.1:81943-81962
GGAAAAGGACAAAACCGCGTGGATCGTTGA81943GATTGTGATCGAGGAGGTGCCGGAGACAGAGCAGGTGATGAAGGGGCTTC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:4472031-4472050
GGAAAACGACAAAACCGCGTGGATCGTTGA4472031GATTGTGATCGAGGAGGTGCCGGAGACAGAACAGGTGATGAAGGGGCTTC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:7437473-7437492
GGAAAAGGACAAAACCGCGTGGATCGTTGA7437473GATTGTGATCGAGGAGGTGCCGGAGACAGAGCAGGTGATGAAGGGGCTTC
Dicrocoelium dendriticum genome assembly, chromosome: 1.
OX104063.1:4342321-4342340
TCGGGTTAGTATTTCAACCTATTAGTACTT4342321GATTGTGATCGAGGAGGTGCAACGTCCTCTTCGTCATTGTGATACGTAAC
Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a018K14_T7.
AM391787.1:494-513
GAAGCCCCTTCATCACCTGCTCTGTCTCCG494GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTTCC
BNARO6GH_T3_024_B06_07DEC2006_046 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES910911.1:53-72
GAAGCCCCTTCATCACCTGCTCTGTCTCCG53GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCCTTTTCC
36RDBRG_UP_082_F12_19JAN2006_086 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES929689.1:559-578
GAAGCCCCTTCATCACCTGTTCTGTCTCCG559GCACCTCCTCGATCACAATCTCAACGATCCACGC
0096631 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV153359.1:555-574
GAAGCCCCTTCATCACCTGCTCTGTCTCCG555GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCCTTTTCC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3084.
FX693595.1:645-664
GAAGCCCCTTCATCACCTGTTCTGTCTCCG645GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10037.
FX727017.1:721-740
GAAGCCCCTTCATCACCTGTTCTGTCTCCG721GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
Brassica napus putative beta-glucan elicitor receptor (Bger1), constans-like protein (CoL), and constans (Coa1) genes, complete cds.
AY280868.2:6515-6534
GAAGCCCCTTCATCACCTGTTCTGTCTCCG6515GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTTCC
Brassica napus genome assembly, chromosome: A10.
HG994364.1:16302365-16302384
GAAGCCCCTTCATCACCTGTTCTGTCTCCG16302365GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:58010741-58010760
GAAGCCCCTTCATCACCTGCTCTGTCTCCG58010741GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCCTTTTCC
Brassica rapa genome, scaffold: A10.
LR031577.1:13230017-13230036
GAAGCCCCTTCATCACCTGTTCTGTCTCCG13230017GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:56102669-56102688
GAAGCCCCTTCATCACCTGCTCTGTCTCCG56102669GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTTCC
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:15962745-15962764
GAAGCCCCTTCATCACCTGTTCTGTCTCCG15962745GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATTGTGATCGAGGAGGTGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATTGTGATCGAGGAGGTGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=GATTGTGATCGAGGAGGTGC&k=0&no_gap=0&offset=0&limit=50
0.319 | 0.209 | search_minus_done; http://172.18.8.135:50400/match?q=GCACCTCCTCGATCACAATC&k=0&no_gap=0&offset=0&limit=45
0.327 | 0.008 | cgi_end;

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