GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-20 08:02:52, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

N100198e rootphos(-) Medicago truncatula cDNA clone MHRP-3B12, mRNA sequence.
AW126002.2:29-57
GCACGAGGAGATGCTGGCTTGCGGGGAA29GATTTGGGCCTCATTCCTTCTTGTGTGCATCCTGTTATGCAAGAACTCGGATTAGTTGG
EST507366 KV3 Medicago truncatula cDNA clone pKV3-47O21 5' end, mRNA sequence.
BG645747.1:45-73
AATTCATCAGAGATGCTGGCTTGCGGGGAA45GATTTGGGCCTCATTCCTTCTTGTGTGCATCCTGTTATGCAAGAACTCGGATTAGTTGG
EST593374 BNIR Medicago truncatula/Meloidogyne incognita mixed EST library cDNA clone pBNIR-25O5, mRNA sequence.
BM815280.1:44-72
AATTCATCAGAGATGCTGGCTTGCGGGGAA44GATTTGGGCCTCATTCCTTCTTGTGTGCATCCTGTTATGCAAGAACTCGGATTAGTTGG
EST645583 HOGA Medicago truncatula cDNA clone HOGA-19D20, mRNA sequence.
CB892791.1:475-503
AATTCATCAGAGATGCTGGCTTGCGGGGAA475GATTTGGGCCTCATTCCTTCTTGTGTGCATCCTGTTATGCAAGAACTCGGATTAGTTGG
s13dNF65A01VI001_449860 Virus-Infected Leaves Medicago truncatula cDNA, mRNA sequence.
CX521037.1:14-42
GGCACGAGGGGAA14GATTTGGGCCTCATTCCTTCTTGTGTGCATCCTGTTATGCAAGAACTCGGATTAGTTGG
TSA: Medicago sativa subsp. falcata cultivar Wisfal FZ0_10100 mRNA sequence.
JL891277.1:313-341
AATTCATCAGAGATGCTGGCCTGCGGGGAA313GATTTGGGCCTCATTCCTTCTTGTGTGCATCCTGTTATGCAAGAACTCGGACTAGTTGG
Medicago truncatula strain A17 clone mth2-6j14, complete sequence.
AC149050.3:121418-121446
AATTCATCAGAGATGCTGGCTTGCGGGGAA121418GATTTGGGCCTCATTCCTTCTTGTGTGCATCCTGTATGTCAATTATATTCCTTAAGCTC
TSA: Medicago sativa cultivar Chilean F0D_8309 mRNA sequence.
JL874736.1:438-466
CCAACTAGTCCGAGTTCTTGCATAACAGGA438TGCACACAAGAAGGAATGAGGCCCAAATCTTCCCCGCAGGCCAGCATCTCTGATGAATT
Medicago truncatula strain A17 clone mth2-63m2, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC173291.5:48606-48634
GAGCTTAAGGAATATAATTGACATACAGGA48606TGCACACAAGAAGGAATGAGGCCCAAATCTTCCCCGCAAGCCAGCATCTCTGATGAATT
Medicago lupulina genome assembly, chromosome: 2.
OY283140.1:13457207-13457235
AAGCTTAAGGAATATAATTGACATACAGGA13457207TGCACACAAGAAGGAATGAGGCCCAAATCTTCCCCGCAGGCCAGCATCTCTGATGAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GATTTGGGCCTCATTCCTTCTTGTGTGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GATTTGGGCCTCATTCCTTCTTGTGTGCA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.621 | 0.612 | search_plus_done; http://172.18.8.135:50400/match?q=GATTTGGGCCTCATTCCTTCTTGTGTGCA&k=0&no_gap=0&offset=0&limit=50
0.674 | 0.054 | search_minus_done; http://172.18.8.135:50400/match?q=TGCACACAAGAAGGAATGAGGCCCAAATC&k=0&no_gap=0&offset=0&limit=43
0.676 | 0.002 | cgi_end;

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