GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:44:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:845867-845891
GGGATTCTTCTGCCGTGGAAATCCATGAGG845867GCAAAAATCTACACGTGTTGAAGCTGTTTCTTGAGTTACATTTATAAATTCCCGT
Gossypium herbaceum isolate GPA1alz chromosome 10.
CP106701.1:852739-852763
GAGATTCTTCTGCCGCGGAAATCCATGAGG852739GCAAAAATCTACACGTGTTGAAGCTGTTTCTTGAGTTACATGTATAAATTCTCGT
Gossypium herbaceum isolate Zhongcao1 chromosome 10.
CP106689.1:118926253-118926277
ACGAGAATTTATACATGTAACTCAAGAAAC118926253AGCTTCAACACGTGTAGATTTTTGCCCTCATGGATTTCCGCGGCAGAAGAATCTC
Gossypium herbaceum isolate Zhongcao1 chromosome 10.
CP106689.1:118933130-118933154
ACGGGAATTTATAAATGTAACTCAAGAAAC118933130AGCTTCAACACGTGTAGATTTTTGCCCTCATGGATTTCCACGGCAGAAGAATCCC
Gossypium hirsutum chromosome 10 SNP marker NG0203671 associated with blue disease resistance genomic sequence.
GU265861.1:318-342
ACGAGAATTTATAAATGTAACTCAAGAANC318AGCTTCAACACGTGTAGATTTTTGCCCNCATGGATTTCCNCGGCAGAAGAATCCC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAAAAATCTACACGTGTTGAAGCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAAAATCTACACGTGTTGAAGCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.101 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAAAATCTACACGTGTTGAAGCT&k=0&no_gap=0&offset=0&limit=50
0.143 | 0.034 | search_minus_done; http://172.18.8.135:50400/match?q=AGCTTCAACACGTGTAGATTTTTGC&k=0&no_gap=0&offset=0&limit=48
0.145 | 0.002 | cgi_end;

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