GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 22:45:19, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

RS2A936TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
EW723808.1:396-417
AATTCGAGGAGATTTTCGACAAGCATGCTC396GCAAACATCGAAATGCTCTCACTTACAAGGAAGTTCTTGAAATGCTTAAGGC
RR1D702TF RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 5', mRNA sequence.
EY897281.1:433-454
AATTCGAGGAGATTTTCGACAAGCATGCTC433GCAAACATCGAAATGCTCTCACTTACAAGGAAGTTCTTGAAATGCTTAAGGC
RS2EZ86TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD569198.1:432-453
AATTCGAGGAGATTTTCGACAAGCATGCTC432GCAAACATCGAAATGCTCTCACTTACAAGGAAGTTCTTGAAATGCTTAAGGC
RS2FL54TF RS2(RS) Raphanus sativus cDNA 5', mRNA sequence.
FD571017.1:426-447
AATTCGAGGAGATTTTCGACAAGCATGCTC426GCAAACATCGAAATGCTCTCACTTACAAGGAAGTTCTTGAAATGCTTAAGGC
RS2A936JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
EW728454.1:401-422
GCCTTAAGCATTTCAAGAACTTCCTTGTAA401GTGAGAGCATTTCGATGTTTGCGAGCATGCTTGTCGAAAATCTCCTCGAATT
RR1D702JQ RR1(CS) Raphanus raphanistrum subsp. maritimus cDNA 3', mRNA sequence.
EY893647.1:418-439
GCCTTAAGCATTTCAAGAACTTCCTTGTAA418GTGAGAGCATTTCGATGTTTGCGAGCATGCTTGTCGAAAATCTCCTCGAATT
RS2EZ86JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD573446.1:370-391
GCCTTAAGCATTTCAAGAACTTCCTTGTAA370GTGAGAGCATTTCGATGTTTGCGAGCATGCTTGTCGAAAATCTCCTCGAATT
RS2FL54JQ RS2(RS) Raphanus sativus cDNA 3', mRNA sequence.
FD574931.1:414-435
GCCTTAAGCATTTCAAGAACTTCCTTGTAA414GTGAGAGCATTTCGATGTTTGCGAGCATGCTTGTCGAAAATCTCCTCGAATT
Raphanus sativus genome assembly, chromosome: 1.
LR778310.1:40371344-40371365
GTCTTAAGCATTTCAAGAACTTCCTTGTAA40371344GTGAGAGCATTTCGATGTTTGCGAGCATGCTTGTCGAAAATCTCCTCGAATT
Raphanus sativus genome assembly, chromosome: 6.
OY743212.1:40371344-40371365
GTCTTAAGCATTTCAAGAACTTCCTTGTAA40371344GTGAGAGCATTTCGATGTTTGCGAGCATGCTTGTCGAAAATCTCCTCGAATT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAAACATCGAAATGCTCTCAC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAACATCGAAATGCTCTCAC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.469 | 0.461 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAACATCGAAATGCTCTCAC&k=0&no_gap=0&offset=0&limit=50
0.876 | 0.407 | search_minus_done; http://172.18.8.135:50400/match?q=GTGAGAGCATTTCGATGTTTGC&k=0&no_gap=0&offset=0&limit=46
0.880 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).