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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-12 07:41:28, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica napus cultivar Xiang5A chromosome 1.
CP123876.1:14155097-14155116
CACACAAGAATCTAAGAAAAAATGCCAGAC14155097GCAAAGTCACTCAACAAGTGGATGGCTTCTGCAACTCTGGTGTGTGTTTT
Brassica napus genome assembly, chromosome: A02.
HG994356.1:13969121-13969140
CACACAAGAATCTAAGAAAAAATGCCAGAC13969121GCAAAGTCACTCAACAAGTGGATGGCTTCTGCAACTCTGGTGTGTGTTTT
Brassica rapa genome, scaffold: A02.
LR031573.1:13679373-13679392
CACACAAGAATCTAAGAAAAAATGCCAGAC13679373GCAAAGTCACTCAACAAGTGGATGGCTTCTGCAACTCTGGTGTGTGTTTT
Brassica rapa genome assembly, chromosome: A02.
LS974618.2:13753042-13753061
CACACAAGAATCTAAGAAAAAATGCCAGAC13753042GCAAAGTCACTCAACAAGTGGATGGCTTCTGCAACTCTGGTGTGTGTTTT
Onchidella celtica genome assembly, chromosome: 1.
OZ007567.1:67182388-67182407
CTTTATAACCAATCCAAAACATTCTTCTAA67182388GCAAAGTCACTCAACAAGTGCTTTGGCTGCAAAAATATTCAGCTCTATGT
Onchidella celtica genome assembly, chromosome: 12.
OZ007578.1:10609473-10609492
CTTTATAACCAATCCAAAACATTCTTCTAA10609473GCAAAGTCACTCAACAAGTGCTTTGACTGCAAAAATATTCAGCTCTATGT
Antiaris toxicaria isolate JCLG002 chromosome 2.
CP141154.1:104946996-104947015
AACCATCCAACACTGAGCCTTCGGAGCCTT104946996CACTTGTTGAGTGACTTTGCTATCCTTTTTTACCAATGCCTTCGTAGTAG
Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence.
CP009619.1:172113-172132
ACCTGCGGTTATTTGGAAGGTAAATCTCTT172113CACTTGTTGAGTGACTTTGCAGTGATGAAAAGCACCTCTCCATTGCTGTA
Agarivorans gilvus strain WH0801, complete genome.
CP013021.1:637494-637513
GACATTCAGCAAATCAAGAGCTTGCGCCGC637494CACTTGTTGAGTGACTTTGCCATCGAACTTAACGTCAGCGTAATCACGCA
Coleophora flavipennella genome assembly, chromosome: 35.
OX369287.1:11670027-11670046
TTTCATCTTGTCCATGTTAATTTTAAGACC11670027CACTTGTTGAGTGACTTTGCTAAGACCATCGAGCATTGTGCTTAGGTCTT
Agonopterix heracliana genome assembly, chromosome: 15.
OY856322.1:9156205-9156224
CGGCGGTGCAGTTGCGACATGCTCAAAAAT9156205CACTTGTTGAGTGACTTTGCTTTAAGTATGATAGTATTTTATCGCATGTC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAAAGTCACTCAACAAGTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAAGTCACTCAACAAGTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.403 | 0.394 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAAGTCACTCAACAAGTG&k=0&no_gap=0&offset=0&limit=50
0.503 | 0.100 | search_minus_done; http://172.18.8.135:50400/match?q=CACTTGTTGAGTGACTTTGC&k=0&no_gap=0&offset=0&limit=44
0.506 | 0.003 | cgi_end;

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