GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:46:35, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392547.1:28274074-28274094
CTGCTTACAAGAAGTTGATATAGGACTTTT28274074GCAAATGAATTTTGGTGCAGAAACTATAATTATTGCTTTGTTAGTATAAAA
Ostrea edulis genome assembly, chromosome: 6.
OX387709.1:53726298-53726318
AGGAAGATTTCAGCCCAAAATTCGGAAAGG53726298GCAAATGAATTTTGGTGCAGAAAAGTTTAGTTGTGCATTTGGACGTTTTAT
24-L105761-1033-034-O05-ccfw IGS-SCF-1033 Bvu-KWS2320 fosmid genomic library Beta vulgaris subsp. vulgaris genomic clone IGS-SCF-1033-034-O05 5', genomic survey sequence.
JY303377.1:592-612
TTTTATACTAACAAAGCAATAATTATAGTT592TCTGCACCAAAATTCATTTGCAAAAGTCCTATATCAACTTCTTGTAAGCAG
Beta vulgaris subsp. vulgaris genome assembly, chromosome: 1.
OX392556.1:27835100-27835120
TTTTATACTAACAAAGCAATAATTATAGTT27835100TCTGCACCAAAATTCATTTGCAAAAGTCCTATATCAACTTCTTGTAAGCAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAAATGAATTTTGGTGCAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAATGAATTTTGGTGCAGA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.088 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAATGAATTTTGGTGCAGA&k=0&no_gap=0&offset=0&limit=50
0.156 | 0.059 | search_minus_done; http://172.18.8.135:50400/match?q=TCTGCACCAAAATTCATTTGC&k=0&no_gap=0&offset=0&limit=48
0.157 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).