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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 20:20:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Arachis hypogaea cultivar Shitouqi chromosome A10.
CP030992.1:6579351-6579370
GATCAACATTCCTTTTGTAGAGGCTCTTGA6579351GCAAATGCCCCTCTATGCTAAATTTATGAAAGAGTTGTTGACCCATAAGA
Arachis hypogaea cultivar Shitouqi chromosome B01.
CP030993.1:38389625-38389644
GATCAACATTCCTTTTGCAGAGGCCCTGGA38389625GCAAATGCCCCTCTATGCTAAATTTATGAAAGAGTTGTTGACCCACAAGA
Arachis hypogaea cultivar Shitouqi chromosome B05.
CP030997.1:101771620-101771639
GATCAACATACCCTTTGCTGAGGCATTAGA101771620GCAAATGCCCCTCTATGCTAAATTTTTAAAGGAGCTCATGACAAGAAAGA
Arachis ipaensis cultivar K30076 chromosome 01.
CP049892.1:39305732-39305751
GATCAACATTCCTTTTGCAGAGGCCCTGGA39305732GCAAATGCCCCTCTATGCTAAATTTATGAAAGAGTTGTTGACCCACAAGA
Arachis ipaensis cultivar K30076 chromosome 05.
CP049896.1:58198730-58198749
GATCAACATACCCCTAGTTGAGGCACTTGA58198730GCAAATGCCCCTCTATGCTAAGTTTTTGAAGGAGCTTATAAACAAGAAGA
Arachis ipaensis cultivar K30076 chromosome 05.
CP049896.1:109086868-109086887
GATCAACATACCCTTTGCTGAGGCATTAGA109086868GCAAATGCCCCTCTATGCTAAATTTTTAAAGGAGCTCATGACAAGAAAGA
Arachis ipaensis cultivar K30076 chromosome 09.
CP049900.1:70638915-70638934
GATCAATATACCCTTTGCTGAGGCATTAGA70638915GCAAATGCCCCTCTATGCTAAATTTTTAAAGGAGCTCATGATAAGAAAGA
Arachis ipaensis cultivar K30076 chromosome 10.
CP049901.1:102397891-102397910
GATCAACATTCCTTTTGTAGAGGCTCTGGA102397891GCAAATGCCCCTCTATGCTAAATTTATGAAAGAATTGTTGACCCACAAGA
Fagus sylvatica genome assembly, chromosome: 1.
OU015761.1:41023876-41023895
GGTTAACTTACCTCTATTACATCTCATCAA41023876GCAAATGCCCCTCTATGCTAAGGTAATTAAGAACTTATGCACTGTCAAGA
Fagus sylvatica genome assembly, chromosome: 7.
OU015767.1:1742978-1742997
GGTTAACCTGCCTCTATTGCATCTCATCAA1742978GCAAATGCCCCTCTATGCTAAGGTAATTAAGGATTTATGCACTATCAAGA
Glycine max DNA, BAC clone: GMJENa0067I19_F, 5'end, cultivar: ENREI.
LB039243.1:523-542
TCTTCTTGGTTAGCATATGCTTCAAAAATT523TAGCATAGAGGGGCATTTGCTGAAGTGCTTCTCCAAAAGGCAAAGTAATT
Arachis hypogaea cultivar Shitouqi chromosome A02.
CP030984.1:37523086-37523105
TTTTTCTTGTCATGAGTTCCTTCAAGAACT37523086TAGCATAGAGGGGCATTTGCTCCAATGCTTTAACAAATGGTATATTGATT
Arachis hypogaea cultivar Shitouqi chromosome A04.
CP030986.1:73920727-73920746
TCTTATGGGTCAGCAATTCTTTCATAAATT73920727TAGCATAGAGGGGCATTTGCTCAAGAGCCTCTGCAAAAGGAATGTTGATC
Arachis hypogaea cultivar Shitouqi chromosome B02.
CP030994.1:34141965-34141984
TCTTGTGGGTCAACAATTCTTTCATAAATT34141965TAGCATAGAGGGGCATTTGCTCCAGAGCCTCTGCAAAAAGAATGTTGATC
Arachis hypogaea cultivar Shitouqi chromosome B05.
CP030997.1:61843067-61843086
TTTTGTGTGTCAACAATTCTTTCATAAATT61843067TAGCATAGAGGGGCATTTGCTCCAGAGCCTCTGTAAAAGGAATGTTGATC
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:69275023-69275042
TCTTTCTTATCATGAGCTCCTTTAAAAATT69275023TAGCATAGAGGGGCATTTGCTCTAATGCCTCAGCAAAGGGTATATTGATC
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:151249204-151249223
TCTTGTGGGTCAATAACTCTTTCATAAATT151249204TAGCATAGAGGGGCATTTGCTCCAGAGCCTCTGCAAAAGGAATGTTAATC
Arachis hypogaea cultivar Shitouqi chromosome B09.
CP031001.1:151274897-151274916
TCTTGTGGGTCAATAACTCTTTCATAAATT151274897TAGCATAGAGGGGCATTTGCTCCAGAGCCTCTGCAAAAGGAATGTTAATC
Arachis ipaensis cultivar K30076 chromosome 02.
CP049893.1:34448539-34448558
TCTTGTGGGTCAACAATTCTTTCATAAATT34448539TAGCATAGAGGGGCATTTGCTCCAGAGCCTCTGCAAAAAGAATGTTGATC
Arachis ipaensis cultivar K30076 chromosome 04.
CP049895.1:89810838-89810857
TTCCTCTTTCTTGTCATGCCTTTAAAAATT89810838TAGCATAGAGGGGCATTTGCTCTAATGCCTCAGCAAAGGATATATTGATC
Arachis ipaensis cultivar K30076 chromosome 05.
CP049896.1:58844622-58844641
TTTTGTGTGTCAACAATTCTTTCATAAATT58844622TAGCATAGAGGGGCATTTGCTCCAGAGCCTCTGTAAAAGGAATGTTGATC
Arachis ipaensis cultivar K30076 chromosome 09.
CP049900.1:150112241-150112260
TCTTGTGGGTCAATAACTCTTTCATAAATT150112241TAGCATAGAGGGGCATTTGCTCCAGAGCCTCTGCAAAAGGAATGTTAATC
Glycine max cultivar Williams 82 chromosome 3.
CP126428.1:11257334-11257353
TCTTCTTGGTTAGCATATGCTTCAAAAATT11257334TAGCATAGAGGGGCATTTGCTGAAGTGCTTCTCCAAAAGGCAAAGTAATT
Fagus sylvatica genome assembly, chromosome: 1.
OU015761.1:34337772-34337791
TCTTGATAGTGCATAAGTCCTTAATTACCT34337772TAGCATAGAGGGGCATTTGCTTGATGAGATGCAATAGAGGCAAGTTAACC
Fagus sylvatica genome assembly, chromosome: 1.
OU015761.1:34445450-34445469
TCTTGATAGTGCATAAGTCCTTAATTACCT34445450TAGCATAGAGGGGCATTTGCTTGATGAGATGCAATAGAGGCAAGTTAACC
Fagus sylvatica genome assembly, chromosome: 5.
OU015765.1:6396732-6396751
TCTTGACAGTGCATAAGTCCTTAATTACCT6396732TAGCATAGAGGGGCATTTGCTTGATGAGATGTAATAGAGGCAAGTTAACC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAAATGCCCCTCTATGCTA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAATGCCCCTCTATGCTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.369 | 0.360 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAATGCCCCTCTATGCTA&k=0&no_gap=0&offset=0&limit=50
0.511 | 0.143 | search_minus_done; http://172.18.8.135:50400/match?q=TAGCATAGAGGGGCATTTGC&k=0&no_gap=0&offset=0&limit=40
0.522 | 0.011 | cgi_end;

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