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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:10:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

BOGAS27TR BOGA Brassica oleracea genomic clone BOGAS27, genomic survey sequence.
BH246691.1:457-476
ACAAGCAACAAGAGACTAACAATTTCATAA457GCAAATTCACGAGCCTACCAAAGATATCTGCAATATCAACATGCGTAAGC
BOGVM79TF BOGV Brassica oleracea genomic clone BOGVM79, genomic survey sequence.
BH448026.1:12-31
CAATGTCATAA12GCAAATTCACGAGCCTACCAACAATATCAACATGCATAAGCAGAACAAGA
BOGQQ67TF BOGQ Brassica oleracea genomic clone BOGQQ67, genomic survey sequence.
BH587877.1:32-51
AGCACAAGTAAGAGACTAACAATGTCATTA32GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCCAAACAAGA
BOHNC46TR BOHN Brassica oleracea genomic clone BOHNC46, genomic survey sequence.
BH596946.1:256-275
CATGAAATTTTAAAAACTCTATAGTCTCAT256GCAAATTCACGAGCCTACCAAAGATATCAACATGCATAAGCCGAACAAGA
BOHWX91TF BO_2_3_KB Brassica oleracea genomic clone BOHWX91, genomic survey sequence.
BH681182.1:309-328
ACAAGCAACAAGAGACTAACAATGTCATAA309GCAAATTCACGAGCCTACCAACAATATCAACATGCATAAGCAGAACAAGA
odi07b03.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH957040.1:459-478
CATGAAATTTTAAAAACTCTACAGTCTCAT459GCAAATTCACGAGCCTACCAAAGATATCAACATGCATAAGCCGAACAAGA
odd87g01.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH965576.1:379-398
ACAAGCAACAAGAGACTAACAATTTCATAA379GCAAATTCACGAGCCTACCAAAGATATCTGCAATATCAACATGCGTAAGC
oeg70b08.b1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BZ037139.1:111-130
AGCACAAGTAAGAGACTAACAATGTCATTA111GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCCAAACAAGA
BONRM37TR BO_1.6_2_KB_tot Brassica oleracea genomic clone BONRM37, genomic survey sequence.
BZ486326.1:322-341
AGCACAAGCAATCGACTAGAAATGTCATAA322GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCAAAACAAAA
BOT01-30E11TR BOT01 Brassica oleracea genomic clone BOT01-30E11, genomic survey sequence.
FI695041.1:775-794
AGCACAAGCAAGAGACTAACAATATCATAG775GCAAATTCACGAGCCTACCAAAGATATCAACATGCACACCTAACAATAAG
BOT01-90G13TR BOT01 Brassica oleracea genomic clone BOT01-90G13, genomic survey sequence.
FI739235.1:819-838
AGCACAAGAAAGAGACTAACAATGTCCTTA819GCAAATTCACGAGCCTACCAAACATATCAACATGTGTTAGTCAAACAAAA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189436.2:14903-14922
ACAAGCACAAGCAGACTAACAATGTCATTA14903GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCCAAACAAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB069A15, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189436.2:15099-15118
AGCAGAAGAAATAGACTAACAATGTCATTA15099GCAAATTCACGAGCCTACCAAAAATATCAACATGCATAAGCCAAACAAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055A02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC232499.1:19705-19724
ACAAGCACAAGCAGACTAACAATGTCATTA19705GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCCAAACAAGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB055A02, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC232499.1:19901-19920
AGCAGAAGAAATAGACTAACAATGTCATTA19901GCAAATTCACGAGCCTACCAAAAATATCAACATGCATAAGCCAAACAAGA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:6568164-6568183
ACAAGCACAAGCAGACTAACAATGTCATTA6568164GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCCAAACAAGA
Brassica napus cultivar Xiang5A chromosome 2.
CP123877.1:6568360-6568379
AGCAGAAGAAATAGACTAACAATGTCATTA6568360GCAAATTCACGAGCCTACCAAAAATATCAACATGCATAAGCCAACCAAGA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:50544414-50544433
AGCACAAGCAAGAGACTAACAATGTCATAA50544414GCAAATTCACGAGCCTACCAAATATATCAACATGCGTAAGCCAAACAAGA
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:50544610-50544629
CAAGCGCACAAGAGACTAACAATGTCATAA50544610GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCCAAACAAGT
Brassica napus cultivar Xiang5A chromosome 9.
CP123884.1:4871582-4871601
TGAAATTTTAAAAACTATACACAGTCTCAT4871582GCAAATTCACGAGCCTACCAAAGATATCAACATGCATAAGACGAACAAGA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:14449196-14449215
AGCGCAAGCAAGAGACGATAAATGTCATAA14449196GCAAATTCACGAGCCTACCAAATATACCAACATGTGTAAGATAAACAAGA
Brassica napus cultivar Xiang5A chromosome 11.
CP123886.1:14449358-14449377
TTAAAAAACTACACAGTTTCACAAGAATAA14449358GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAACAAGT
Brassica napus cultivar Xiang5A chromosome 12.
CP123887.1:26818949-26818968
ACAAGCAACAAGAGACTAACAATGTCATAA26818949GCAAATTCACGAGCCTACCAACAATATCAACATGCATAAGCAGAACAAGA
Brassica napus cultivar Xiang5A chromosome 13.
CP123888.1:41999676-41999695
AGCACAAGCAATCGACTAAAAATTTCATAA41999676GCAAATTCACGAGCCTACCAAACATATCAACATCCGTAAGCCAAACAAGA
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:14840506-14840525
AGAACAAGCAAGAGACTAACAATGTCATAA14840506GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAACAAGT
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:28323908-28323927
GGCACAAGAAATTGTCTAGAAATGTCATAA28323908GCAAATTCACGAGCCTACCAAAAGATATCAATATGCGTAAGCCAAACAAG
Brassica napus cultivar Xiang5A chromosome 15.
CP123890.1:28324287-28324306
GCAAGCCACAAGCGATTAACAATGTCATAA28324287GCAAATTCACGAGCCTACCAAAGATATCAATATGCGTAAGCCAAACAAGT
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:26950484-26950503
CATGAAATTTTAAAAACTCTACAGTCTCAT26950484GCAAATTCACGAGCCTACCAAAGATATCAACATGCATAAGCCGAACAAGA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:26951055-26951074
ACAAGCAACAAGAGACTAACAATTTCATAA26951055GCAAATTCACGAGCCTACCAAAGATATCTGCAACATCAACATGCGTAAGC
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:12173323-12173342
AATGCAAGCAAGAGACTAGAAATGTCATAA12173323GCAAATTCACGAGCCTACCAAATATATCAACATGCGTAAGACAAACAAGA
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:12173510-12173529
ATAAAAAACAAGAGACTAACAATTTCATAA12173510GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAACAAGA
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:12173882-12173901
AGAACAAACAAGAGACTAACAATGTCATAA12173882GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAATAAGA
Brassica napus cultivar Xiang5A chromosome 17.
CP123892.1:32886031-32886050
AGCACAAGAAATCGACTAGAAATGTCATAA32886031GCAAATTCACGAGCCTACCAAACATACCAACATGCGTAAGCCAAACAAGA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:42238139-42238158
CATGAAATTTTAAAAACTCTACAGTCTCAT42238139GCAAATTCACGAGCCTACCAAAGATATCAACATGCATAAGCCGAACAAGA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:42238709-42238728
ACAAGCAACAAGAGACTAACAATTTCATAA42238709GCAAATTCACGAGCCTACCAAAGATATCTGCAATATCAACATGCGTAAGC
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:44478829-44478848
ACAAGCAACAAGAAACTAACAATGTAATTA44478829GCAAATTCACGAGCCTACCAAAGATATCAACATGCATACACAGAACAAGA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:44479021-44479040
ATAAGCAACAAAAGACTAACAATGTCATAA44479021GCAAATTCACGAGCCTACCAAAGATATCAACATGCGATATCAACATGCGT
Brassica napus genome assembly, chromosome: A01.
HG994355.1:6704369-6704388
ACAAGCACAAGCAGACTAACAATGTCATTA6704369GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAACCAAACAAGA
Brassica napus genome assembly, chromosome: A01.
HG994355.1:21123777-21123796
GGCACAATCAATCGACTAGAAATGTCATAA21123777GCAAATTCACGAGCCTACCAAAGAATATCAATATGCGTAAGCCAAACAAC
Brassica napus genome assembly, chromosome: A05.
HG994359.1:12153730-12153749
AATGCAAGCAAGAGACTAGAAATGTCATAA12153730GCAAATTCACGAGCCTACCAAATATATCAACATGCGTAAGACAAACAAGA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:12153917-12153936
ATAAAAAACAAGAGACTAACAATTTCATAA12153917GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAACAAGA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:12154289-12154308
AGAACAAACAAGAGACTAACAATGTCATAA12154289GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAATAAGA
Brassica napus genome assembly, chromosome: A05.
HG994359.1:29243498-29243517
AGCACAAGAAATCGACTAGAAATGTCATAA29243498GCAAATTCACGAGCCTACCAAACATACCAACATGCGTAAGCCAAACAAGA
Brassica napus genome assembly, chromosome: C01.
HG994365.1:10435515-10435534
ACCACAAGCAAGCGATTAACAATGTCATAA10435515GCAAATTCACGAGCCTACCAAAGATATCAATATGCGTAATCCAAACAAGT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:6636646-6636665
AGCACAAGAAATCATCTAGAAATGTTATAA6636646GCAAATTCACGAGCCTACCAAAGATATCAATATGCGTAAGCCAAACAAGT
Brassica napus genome assembly, chromosome: C02.
HG994366.1:56146133-56146152
TGAAATTTTAAAAACTCTACACAGTCTCAT56146133GCAAATTCACGAGCCTACCAAAGATATCAACATGCATAAGCCGAACAAGA
Brassica napus genome assembly, chromosome: C02.
HG994366.1:56146703-56146722
ACAAGCAACAAGAGACTAACAATGTCATAA56146703GCAAATTCACGAGCCTACCAAAGATATCAACATGCAATATCAACATGCGT
Brassica napus genome assembly, chromosome: C03.
HG994367.1:33921718-33921737
ACAAGCAACAAGAGACTAACAATTTCATAA33921718GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCAGAAGAAGA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55213092-55213111
AGCACAAGCAAGAAACTAACAATGTCATTA55213092GCAAATTCACGAGCCTACCAAAGATATCAACATGGGAAGCCAAACAAGAA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:55213285-55213304
AGCACAAGCAAGAGACTAACAAAATCATTA55213285GCAAATTCACGAGCCTACCAAAAATATCAACATGCGTAAGCCAAACAAGA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:68860008-68860027
AGAACAAGCAAGAGACTAACAATTTCATAA68860008GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAACAAGA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:44292625-44292644
AGCACAAGCAAGAGACTAACAATGTCATAA44292625GCAAATTCACGAGCCTACCAAATATATCAACATGCGTAAGCCAAACAAGA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:44292821-44292840
CAAGCGCACAAGAGACTAACAATGTCATAA44292821GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCCAAATAAGT
Brassica napus genome assembly, chromosome: C05.
HG994369.1:16643701-16643720
TGAAATTTTAAAAACTCTACACAGTCTCAT16643701GCAAATTCACGAGCCTACCAAAGATATCAACATGCATAAGCCGAACAAGA
Brassica napus genome assembly, chromosome: C05.
HG994369.1:36041472-36041491
AGCACAAGCAATCGACTAGAAATGTCATAA36041472GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCAAAACAAAA
Brassica napus genome assembly, chromosome: C06.
HG994370.1:20510368-20510387
ACAAGCAACAAGAGACTAACAATGTCATAA20510368GCAAATTCACGAGCCTACCAACAATATCAACATGCATAAGCAGAACAAGA
Brassica napus genome assembly, chromosome: C07.
HG994371.1:36844552-36844571
AGCACAAGTAAGAGACTAACAATGTCATTA36844552GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAGCCAAACAAGA
Brassica rapa genome, scaffold: A05.
LR031570.1:17909518-17909537
AATGCAAGCAAGAGACTAGAAATGTCATAA17909518GCAAATTCACGAGCCTACCAAATATATCAACATGCGTAAGACAAACAAGA
Brassica rapa genome, scaffold: A05.
LR031570.1:17910076-17910095
AGAACAAACAAGAGACTAACAATGTCATAA17910076GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAATAAGA
Brassica rapa genome, scaffold: A05.
LR031570.1:35280876-35280895
AGCACAAGAAATCGACTAGAAATGTCATAA35280876GCAAATTCACGAGCCTACCAAACATACCAACATGCGTAAGCCAAACAAGA
Brassica rapa genome, scaffold: A01.
LR031571.1:6545693-6545712
ACAAGCACAAGCAGACTAACAATGTCATTA6545693GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAACCAAACAAGA
Brassica rapa genome, scaffold: A01.
LR031571.1:6545889-6545908
AGCAGAAGAAATAGACTAACAATGTCATTA6545889GCAAATTCACGAGCCTACCAAAAATATCAACATGCATAAGCCAAACAAGA
Brassica rapa genome, scaffold: A01.
LR031571.1:6553263-6553282
ACAAGCACAAGCAGACTAACAATGTCATTA6553263GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAACCAAACAAGA
Brassica rapa genome, scaffold: A01.
LR031571.1:6553459-6553478
AGCAGAAGAAATAGACTAACAATGTCATTA6553459GCAAATTCACGAGCCTACCAAAAATATCAACATGCATAAGCCAAACAAGA
Brassica rapa genome, scaffold: A01.
LR031571.1:26310921-26310940
GGCACAATCAATCGACTAGAAATGTCATAA26310921GCAAATTCACGAGCCTACCAAAGAATATCAATATGCGTAAGCCAAACAAC
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:6569970-6569989
ACAAGCACAAGCAGACTAACAATGTCATTA6569970GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAACCAAACAAGA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:6570166-6570185
AGCAGAAGAAATAGACTAACAATGTCATTA6570166GCAAATTCACGAGCCTACCAAAAATATCAACATGCATAAGCCAAACAAGA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:6577536-6577555
ACAAGCACAAGCAGACTAACAATGTCATTA6577536GCAAATTCACGAGCCTACCAAAGATATCAACATGCGTAAACCAAACAAGA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:6577732-6577751
AGCAGAAGAAATAGACTAACAATGTCATTA6577732GCAAATTCACGAGCCTACCAAAAATATCAACATGCATAAGCCAAACAAGA
Brassica rapa genome assembly, chromosome: A01.
LS974617.2:26831511-26831530
GGCACAATCAATCGACTAGAAATGTCATAA26831511GCAAATTCACGAGCCTACCAAAGAATATCAATATGCGTAAGCCAAACAAC
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:11999631-11999650
AATGCAAGCAAGAGACTAGAAATGTCATAA11999631GCAAATTCACGAGCCTACCAAATATATCAACATGCGTAAGACAAACAAGA
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:12000189-12000208
AGAACAAACAAGAGACTAACAATGTCATAA12000189GCAAATTCACGAGCCTACCAAACATATCAACATGCGTAAGCCAAATAAGA
Brassica rapa genome assembly, chromosome: A05.
LS974621.2:31960948-31960967
AGCACAAGAAATCGACTAGAAATGTCATAA31960948GCAAATTCACGAGCCTACCAAACATACCAACATGCGTAAGCCAAACAAGA
Raphanus sativus genome assembly, chromosome: 4.
OY743210.1:37415732-37415751
ATCACAAGCAAGAGACTAATCATATCATAA37415732GCAAATTCACGAGCCTACCAAAGATATTAACATACGTAAGCCAAACAAGT
Bellardia bayeri genome assembly, chromosome: 1.
OX493264.1:108005515-108005534
AATTCACACCATATATTCGATTTAACCTCT108005515GCAAATTCACGAGCCTACCAACGGCTAGAATTTCTGATTAAAGATCCTTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAAATTCACGAGCCTACCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAATTCACGAGCCTACCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.562 | 0.553 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAATTCACGAGCCTACCA&k=0&no_gap=0&offset=0&limit=50
0.708 | 0.146 | search_minus_done; http://172.18.8.135:50400/match?q=TGGTAGGCTCGTGAATTTGC&k=0&no_gap=0&offset=0&limit=0
0.708 | 0.000 | cgi_end;

GGGenome by @meso_cacase at DBCLS
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