GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-03-14 21:42:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

sg31c01.x1 Gm-c1024 Glycine max cDNA clone GENOME SYSTEMS CLONE ID: Gm-c1024-2233 3' similar to TR:O80630 O80630 DISEASE RESISTANCE RESPONSE PROTEIN, mRNA sequence.
AW310991.1:65-88
CTCATTACAACACGAAATACAAACATTTTT65GCAACAAGAAAGAAGTTAACAGCACAGCATATAAGAGAGAGAGAGAGAGAGAGA
GLQAN61TF JCVI-SOY2 Glycine max cDNA 5', mRNA sequence.
FK012864.1:390-413
CTCATTACAACACGAAATACAAACATTTTT390GCAACAAGAAAGAAGTTAACAGCACAGCATATAAGAAAGAGAGAGAGAGAGAGG
four-F9.txt SSH cDNA library induced by salt from soybean Glycine max cDNA, mRNA sequence.
HO760356.1:74-97
CTCATTACAACACGAAATACAAACATTTTT74GCAACAAGAAAGAAGTTAACAGCACAGCATATAAGAGAGAGAGAGAGAGAGAGG
Glycine max cultivar Williams 82 chromosome 11.
CP126436.1:10958462-10958485
CTCATTACAACACGAAATACAAACATTTTT10958462GCAACAAGAAAGAAGTTAACAGCACAGCATATAAGAGAGAGAGAGAGAGAGAGA
sam83a07.y2 Gm-c1087 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1087-421 5', mRNA sequence.
BM523392.1:98-121
TCTCTCTCTCTCTCTCTCTCTTATATGCTG98TGCTGTTAACTTCTTTCTTGTTGCAAAAATGTTTGTATTTCGTGTTGTAATGAG
sap76c05.y1 Gm-c1087 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1087-6633 5' similar to TR:Q9SIA8 Q9SIA8 PUTATIVE DISEASE RESISTANCE RESPONSE PROTEIN, mRNA sequence.
BQ612011.1:355-378
TCTCTCTCTCTCTCTCTCTCTTATATGCTG355TGCTGTTAACTTCTTTCTTGTTGCAAAAATGTTTGTATTTCGTGTTGTAATGAG
five-B1.txt SSH cDNA library induced by salt from soybean Glycine max cDNA, mRNA sequence.
HO760234.1:495-518
TCTCTCTCTCTCTCTCTCTCTTATATGCTG495TGCTGTTAACTTCTTTCTTGTTGCAAAAATGTTTGTATTTCGTGTTGTAATGAG
Glycine max cultivar Williams 82 chromosome 11.
CP126436.1:10975251-10975274
TCTCTCTCTCTCTCTCTCTCTTATATGCTG10975251TGCTGTTAACTTCTTTCTTGTTGCAAAAATGTTTGTATTTCGTGTTGTAATGAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAACAAGAAAGAAGTTAACAGCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAACAAGAAAGAAGTTAACAGCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.267 | 0.259 | search_plus_done; http://172.18.8.135:50400/match?q=GCAACAAGAAAGAAGTTAACAGCA&k=0&no_gap=0&offset=0&limit=50
0.417 | 0.150 | search_minus_done; http://172.18.8.135:50400/match?q=TGCTGTTAACTTCTTTCTTGTTGC&k=0&no_gap=0&offset=0&limit=46
0.420 | 0.003 | cgi_end;

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