GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:49:09, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-27245 Leaf Coffea canephora cDNA clone cccl5e10 5', mRNA sequence.
DV685797.1:210-238
CACCACCAAAGGTAAGACTGTTAAGTCTAA210GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT
CGN-29952 Leaf Coffea canephora cDNA clone cccl5e9 5', mRNA sequence.
DV687818.1:210-238
CACCACCAAAGGTAAGACTGTTAAGTCTAA210GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT
CGN-54264 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w3p13 5', mRNA sequence.
DV706745.1:719-747
CACCACCAAAGGTAAGACTGTTAAGTCTAA719GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT
CGN-56743 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w9o5 5', mRNA sequence.
DV708662.1:719-747
CACCACCAAAGGTAAGACTGTTAAGTCTAA719GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT
TransId-236093 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEXE38TV similar to At5g58760 - Arabidopsis thaliana (Mouse-ear cress), mRNA sequence.
GT007769.1:395-423
CACCACCAAAGGTAAGACTGTTAAGTCTAA395GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT
CA00-XX-RX1-036-E07-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-036-E07-EB, mRNA sequence.
GT729652.1:160-188
CACCACCAAAGGTAAGACTGTTAAGTCTAA160GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT
CA00-XX-CB1-106-G05-RF.F Coffea arabica CB1 Coffea arabica cDNA clone CA00-XX-CB1-106-G05-RF, mRNA sequence.
GT732969.1:119-147
CACCACCAAAGGTAAGACTGTTAAGTCTAA119GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT
CA00-XX-CS1-091-B11-AB.F Coffea arabica CS1 Coffea arabica cDNA clone CA00-XX-CS1-091-B11-AB, mRNA sequence.
GW449873.1:146-174
CACCACCAAAGGTAAGACTGTTAAGTCTAA146GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCATCTA
CA00-XX-LV8-048-B11-EP.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-048-B11-EP, mRNA sequence.
GW478283.1:181-209
CACCACCAAAGGTAAGACTGTTAAGTCTAA181GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT
CA00-XX-LV4-018-A07-SB.F Coffea arabica LV4 Coffea arabica cDNA clone CA00-XX-LV4-018-A07-SB, mRNA sequence.
GW488495.1:275-303
CACCACCAAAGGTAAGACTGTTAAGTCTAA275GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCATCTA
CCES33 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110684.1:719-747
CACCACCAAAGGTAAGACTGTTAAGTCTAA719GCAACCTTATCTAGATTCAACTTCAACTTCTAAATCAAAATCAAAATCAAAATCAAAAT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAACCTTATCTAGATTCAACTTCAACTT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAACCTTATCTAGATTCAACTTCAACTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.014 | 1.006 | search_plus_done; http://172.18.8.135:50400/match?q=GCAACCTTATCTAGATTCAACTTCAACTT&k=0&no_gap=0&offset=0&limit=50
1.037 | 0.023 | search_minus_done; http://172.18.8.135:50400/match?q=AAGTTGAAGTTGAATCTAGATAAGGTTGC&k=0&no_gap=0&offset=0&limit=39
1.037 | 0.000 | cgi_end;

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