GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 10:12:32, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

KBrB037H08F KBrB, Brassica rapa BamHI BAC library Brassica rapa subsp. pekinensis genomic clone KBrB037H08, genomic survey sequence.
DX038346.1:48-67
GTCTTGAACCAACCTGCAAAAGTATTCCCT48GCAAGACGTATGACGGTTCATGGCTGAGACAGAGCATACTACCACACCTA
Brassica rapa subsp. oleifera cultivar Inbred line 'Chiifu' clone KBrH010M08, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC172873.1:13731-13750
GTCTTGAACCAACCTGCAAAAGTATTCCCT13731GCAAGACGTATGACGGTTCATGGCTGAGACAGAGCATACTACCACACCTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB012F17, *** SEQUENCING IN PROGRESS ***, 2 ordered pieces.
AC189226.2:136607-136626
GTCTTGAACCAACCTGCAAAAGTATTCCCT136607GCAAGACGTATGACGGTTCATGGCTGAGACAGAGCATACTACCACACCTA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH138P04, complete sequence.
AC155338.1:88203-88222
GTCTTGAACCAACCTGCAAAAGTATTCCCT88203GCAAGACGTATGACGGTTCATGGCTGAGACAGAGCATACTACCACACCTA
Brassica oleracea var. viridis mRNA, clone: KALE-120C01, 3' end sequence.
DK561053.1:106-125
TAGGTGTGGTAGTATGCTCTGTCTCAGACA106TGAACCGTCATACGTCTTGCAGAGAATACTTTTGCAGGTTGGTTCAAGAC
Brassica napus cultivar Xiang5A chromosome 4.
CP123879.1:68155575-68155594
TAGGTGTGGTAGTATGCTCTGTCTCAGACA68155575TGAACCGTCATACGTCTTGCAGGGAATACTTTTGCAGGTTGGTTCAAGAC
Brassica napus genome assembly, chromosome: A09.
HG994363.1:52116619-52116638
TAGGTGTGGTAGTATGCTCTGTCTCAGCCA52116619TGAACCGTCATACGTCTTGCAGGGAATACTTTTGCAGGTTGGTTCAAGAC
Brassica rapa genome, scaffold: A09.
LR031568.1:56186837-56186856
TAGGTGTGGTAGTATGCTCTGTCTCAGCCA56186837TGAACCGTCATACGTCTTGCAGGGAATACTTTTGCAGGTTGGTTCAAGAC
Brassica rapa genome assembly, chromosome: A09.
LS974625.2:66710993-66711012
TAGGTGTGGTAGTATGCTCTGTCTCAGCCA66710993TGAACCGTCATACGTCTTGCAGGGAATACTTTTGCAGGTTGGTTCAAGAC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAAGACGTATGACGGTTCA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAGACGTATGACGGTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.114 | 0.105 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAGACGTATGACGGTTCA&k=0&no_gap=0&offset=0&limit=50
0.205 | 0.092 | search_minus_done; http://172.18.8.135:50400/match?q=TGAACCGTCATACGTCTTGC&k=0&no_gap=0&offset=0&limit=46
0.209 | 0.004 | cgi_end;

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