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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
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2025-04-11 23:20:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

JP 2004016024-A/6: A primer for detecting DNA of the Brassica oleracea var. capitata.
BD410872.1:1-24
1GCAAGATCTTGCTCTGATCACCTG
odf15c12.g1 B.oleracea002 Brassica oleracea genomic, genomic survey sequence.
BH940689.1:292-315
TCTGGTCCCTGACAACATTCTTATCACTTG292GCAAGATCTTGCTCTGATCACCTGCACAACAAAAACAAGGAATGACTAACAAGT
BONOQ56TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONOQ56, genomic survey sequence.
BZ498823.1:218-241
TCTGGTCCCTGACAACATTCTTATCACTTG218GCAAGATCTTGCTCTGATCACCTGCACAACAAAAACAAGGAATGACTAACAAGT
JP 2004016024-A/9: A primer for detecting DNA of the Brassica oleracea var. capitata.
BD410875.1:1492-1515
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG1492CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACC
Brassica oleracea var. capitata DNA, STS, OPA06-1500.
AB088220.1:1492-1515
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG1492CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACC
Brassica napus cultivar Xiang5A chromosome 6.
CP123881.1:39756346-39756369
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG39756346CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACCAGA
Brassica napus cultivar Xiang5A chromosome 14.
CP123889.1:1452679-1452702
CTTGTTAGTCATTCCTTTGTTTTTGTTATG1452679CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTTAGGGACCAGA
Brassica napus genome assembly, chromosome: A04.
HG994358.1:1351609-1351632
CTTGTTAGTCATTCCTTTGTTTTTGTTATG1351609CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTTAGGGACCAGA
Brassica napus genome assembly, chromosome: C04.
HG994368.1:34481888-34481911
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG34481888CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACCAGA
Brassica rapa genome, scaffold: A04.
LR031576.1:1339725-1339748
CTTGTTAGTCATTCCTTTGTTTTTGTTATG1339725CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTTAGGGACCAGA
Brassica oleracea HDEM genome, scaffold: C4.
LR031873.1:33582525-33582548
ACTTGTTAGTCATTCCTTGTTTTTGTTGTG33582525CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTCAGGGACCAGA
Brassica rapa genome assembly, chromosome: A04.
LS974620.2:1361970-1361993
CTTGTTAGTCATTCCTTTGTTTTTGTTATG1361970CAGGTGATCAGAGCAAGATCTTGCCAAGTGATAAGAATGTTGTTAGGGACCAGA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAAGATCTTGCTCTGATCACCTG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAGATCTTGCTCTGATCACCTG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.403 | 0.394 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAGATCTTGCTCTGATCACCTG&k=0&no_gap=0&offset=0&limit=50
0.524 | 0.121 | search_minus_done; http://172.18.8.135:50400/match?q=CAGGTGATCAGAGCAAGATCTTGC&k=0&no_gap=0&offset=0&limit=47
0.530 | 0.006 | cgi_end;

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