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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:38:11, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Paenibacillus polymyxa strain Sb3-1, complete genome.
CP010268.1:684390-684409
AAGGCTTTGCCGTTGTGGCCAATGAAGTAC684390GCAAGCTGGCAGAACAATCTGCGGAAGCAACTAAACAAATTACGTCTCTG
Paenibacillus sp. lzh-N1 chromosome, complete genome.
CP025696.1:5354154-5354173
AAGGCTTTGCCGTTGTGGCCAATGAAGTAC5354154GCAAGCTGGCAGAACAATCTGCGGAGGCAACTAAACAAATTACTTCTTTG
Paenibacillus polymyxa strain ZF129 chromosome, complete genome.
CP040829.1:5479136-5479155
AAGGCTTTGCCGTTGTGGCCAATGAAGTAC5479136GCAAGCTGGCAGAACAATCTGCGGAGGCAACTAAACAAATTACGTCTCTG
Paenibacillus polymyxa SC2, complete genome.
CP002213.2:2090667-2090686
CAAAGAAGTAATTTGTTTAGTTGCCTCCGC2090667AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa SQR-21, complete genome.
CP006872.1:2111613-2111632
CAGAGACGTAATTTGTTTAGTTGCCTCCGC2111613AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain CF05 genome.
CP009909.1:5071651-5071670
CAGAGACGTAATTTGTTTAGTTGCCTCCGC5071651AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain CJX518 chromosome, complete genome.
CP029370.1:2000730-2000749
CAGAGACGTAATTTGTTTAGTTGCTTCCGC2000730AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus sp. M-152 chromosome, complete genome.
CP034141.1:2119717-2119736
CAAAGAAGTAATTTGTTTAGTTGCCTCCGC2119717AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain ZF197 chromosome, complete genome.
CP042272.1:220219-220238
CAGTGACGTAATTTGTTTCGTTGCCTCCGC220219AGATTGTTCTGCCAGCTTGCGTACTTCACTGGCTACAACGGCAAAGCCTT
Paenibacillus polymyxa strain EB4 G3 chromosome, complete genome.
CP084033.1:2065310-2065329
CAGAGACGTAATTTGTTTAGTTGCCTCCGC2065310AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain ACCC03434 chromosome, complete genome.
CP126079.1:2118681-2118700
CAGAGACGTAATTTGTTTAGTTGCCTCCGC2118681AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain YL-C1 chromosome.
CP127103.1:2129345-2129364
CAGAGACGTAATTTGTTTAGTTGCCTCCGC2129345AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa strain C2 chromosome, complete genome.
CP139198.1:2090637-2090656
CAAAGAAGTAATTTGTTTAGTTGCCTCCGC2090637AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT
Paenibacillus polymyxa M1 main chromosome, complete genome.
HE577054.1:2090782-2090801
CAAAGAAGTAATTTGTTTAGTTGCCTCCGC2090782AGATTGTTCTGCCAGCTTGCGTACTTCATTGGCCACAACGGCAAAGCCTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAAGCTGGCAGAACAATCT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAAGCTGGCAGAACAATCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.140 | 0.132 | search_plus_done; http://172.18.8.135:50400/match?q=GCAAGCTGGCAGAACAATCT&k=0&no_gap=0&offset=0&limit=50
0.221 | 0.081 | search_minus_done; http://172.18.8.135:50400/match?q=AGATTGTTCTGCCAGCTTGC&k=0&no_gap=0&offset=0&limit=47
0.228 | 0.007 | cgi_end;

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