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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 19:49:39, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

OPVM01603 Elaeis guineensis shoot apex Elaeis guineensis cDNA clone OPN0XX_C55-1.seq, mRNA sequence.
EL687973.1:448-471
AGGAGAGGATGGAATAGTTTCTCCAAGATT448GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC
EoEST1230 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-1250 5' similar to Unknown protein [Note, similar to Oryza sativa (japonica cultivar-group) clone Os01g0589500, ge
EL930396.1:435-458
AGGAGAGGATGGAATAGTTTCTCCAAGATT435GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC
EoEST2496 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-2667 5' similar to unknown protein, mRNA sequence.
ES370685.1:449-472
AGGAGAGGATGGAATAGTTTCTCCAAGATT449GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC
EoEST2924 Oil palm mesocarp-tissue cDNA Entry Library Elaeis oleifera cDNA clone Mo17-3152 5' similar to unknown protein, mRNA sequence.
ES414518.1:449-472
AGGAGAGGATGGAATAGTTTCTCCAAGATT449GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC
pOP-EAP02319_EST_C_1_pBSK_SK EA (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EAP02319 5', mRNA sequence.
EY405522.1:263-286
AGGAGAGGATGGAATAGTTTCTCCAAGATT263GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC
pOP-EO04659_EST_C_1_pSK_SK EO (Oil Palm Embryoid) Elaeis guineensis cDNA clone pOP-EO04659 5', mRNA sequence.
EY409448.1:341-364
AGGAGAGGATGGAATAGTTTCTCCAAGATT341GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC
TSA: Elaeis guineensis EgEfMPOB00191 holocarboxylase synthetase mRNA, complete cds, mRNA sequence.
EU285005.1:288-311
AGGAGAGGATGGAATAGTTTCTCCAAGATT288GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC
TSA: Elaeis guineensis isotig08760.Elguifruit mRNA sequence.
JO095990.1:441-464
AGGAGAGGATGGAATAGTTTCTCCAAGATT441GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC
Elaeis guineensis clone estEgSNP12 holocarboxylase synthetase (HCS) mRNA, complete cds.
JX438711.1:431-454
AGGAGAGGATGGAATAGTTTCTCCAAGATT431GCAATTCCAACACCAGCATCCACATGTCCAAACTGCAATGCATTTTACAAACTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAATTCCAACACCAGCATCCACA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAATTCCAACACCAGCATCCACA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.412 | 0.403 | search_plus_done; http://172.18.8.135:50400/match?q=GCAATTCCAACACCAGCATCCACA&k=0&no_gap=0&offset=0&limit=50
0.433 | 0.021 | search_minus_done; http://172.18.8.135:50400/match?q=TGTGGATGCTGGTGTTGGAATTGC&k=0&no_gap=0&offset=0&limit=41
0.433 | 0.000 | cgi_end;

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