GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-06 05:02:16, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Manihot esculenta mRNA, clone: CAS01_013_C04, 5'end.
DB924415.1:310-331
ACTCTAATGGCCGCGTTGAAGAGATCAGTG310GCACAATCCGAGCAAGCGAGATCATGAAAGCATACCCAAAACATGTCTTGAA
Manihot esculenta mRNA, clone: CAS01_014_C09, 5'end.
DB924790.1:226-247
ACTCTAATGGCCGCGTTGAAGAGATCAGTG226GCACAATCCGAGCAAGCGAGATCATGAAAGCATACCCAAAACATGTCTTGAA
Manihot esculenta mRNA, clone: CAS01_024_N10, 5'end.
DB928631.1:271-292
ACTCTAATGGCCAAGTAGAAGAAATCAGTG271GCACAATCCGAGCAAGCGAGATCATGAAAGCTCACCCAAAACACGTCTTGAA
U_SX-090909_plate73p12.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG972753.1:237-258
ACTCTAATGGCCGCGTTGAAGAGATCAGTG237GCACAATCCGAGCAAGCGAGATCATGAAAGCATACCCAAAACATGTCTTGAA
U_SX-090916_plate68o10.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG975202.1:237-258
ACTCTAATGGCCGCGTTGAAGAGATCAGTG237GCACAATCCGAGCAAGCGAGATCATGAAAGCATACCCAAAACATGTCTTGAA
U_SX-090916_plate70n18.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG975466.1:165-186
ACTCTAATGGCCGCGTTGAAGAGATCAGTG165GCACAATCCGAGCAAGCGAGATCATGAAAGCATACCCAAAACATGTCTTGAA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCACAATCCGAGCAAGCGAGAT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCACAATCCGAGCAAGCGAGAT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.470 | 0.461 | search_plus_done; http://172.18.8.135:50400/match?q=GCACAATCCGAGCAAGCGAGAT&k=0&no_gap=0&offset=0&limit=50
0.500 | 0.030 | search_minus_done; http://172.18.8.135:50400/match?q=ATCTCGCTTGCTCGGATTGTGC&k=0&no_gap=0&offset=0&limit=44
0.500 | 0.000 | cgi_end;

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