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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 18:06:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Podarcis lilfordi genome assembly, chromosome: 6.
OX395131.1:71193408-71193427
TTTTCCCAGGCTTCCTTCTCTCACTACATG71193408GCACAATTAGCTGGTGTTGGCCTCTGGTGTGTCACTTTGATGTTCAATTT
Sequence 621 from Patent WO2004087952.
CQ893206.1:314-333
ACAACAGATGCCGTACAAGTAATACAAGCG314GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
EST460718 potato leaves and petioles Solanum tuberosum cDNA clone cSTB42D4 5' sequence, mRNA sequence.
BG096199.1:58-77
ACAACAGATGCTGTACAAGTTATACAAGCT58GCACAATTAGCTGGTGTTGGGCATGTGGCCATAGTCTATGATGAATCTTC
EST534800 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCAL58 5' sequence, mRNA sequence.
BI432039.1:497-516
ACAACAGATGCTGTACAAGTTTTACAAGCT497GCACAATTAGCTGGTGTTGGGCATGTGGCCATAGTCTATGATGAATCTTC
EST720765 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POADI79 5' end, mRNA sequence.
CK274687.1:637-656
ACAACAGATGCTGTACAAGTTATACAAGCT637GCACAATTAGCTGGTGTTGGGCATGTGGCCATAGTCTATGATGAATCTTC
EST724710 potato abiotic stress cDNA library Solanum tuberosum cDNA clone POAE723 5' end, mRNA sequence.
CK278632.1:620-639
ACAACAGATGCTGTACAAGTTATACAAGCT620GCACAATTAGCTGGTGTTGGGCATGTGGCCATAGTCTATGATGAATCTTC
KP1B.037B11F.050628T7 KP1B Nicotiana tabacum cDNA clone KP1B.037B11, mRNA sequence.
DV159333.1:730-749
ACAACAGATGCCGTACAAGTAATACAAGCG730GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCCTC
KL4B.103G23F.051103T7 KL4B Nicotiana tabacum cDNA clone KL4B.103G23, mRNA sequence.
DV999579.1:338-357
ACAACAGATGCCGTACAAGTAATACAAGCG338GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
KL4B.108M19F.051105T7 KL4B Nicotiana tabacum cDNA clone KL4B.108M19, mRNA sequence.
DW000752.1:667-686
ACAACAGATGCCGTACAAGTAGTACAAGCG667GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
KL4B.108P07F.051105T7 KL4B Nicotiana tabacum cDNA clone KL4B.108P07, mRNA sequence.
DW000801.1:668-687
ACAACAGATGCCGTACAAGTAATACAAGCG668GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
KL4B.109K23F.051105T7 KL4B Nicotiana tabacum cDNA clone KL4B.109K23, mRNA sequence.
DW000986.1:639-658
ACAACAGATGCCGTACAAGTAATACAAGCG639GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
KN6B.110P18F.060106T7 KN6B Nicotiana tabacum cDNA clone KN6B.110P18, mRNA sequence.
EB442062.1:735-754
ACAACAGATGCCGTACAAGTAATACAAGCG735GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
KL4B.111B10F.060128T7 KL4B Nicotiana tabacum cDNA clone KL4B.111B10, mRNA sequence.
EB680689.1:683-702
ACAACAGATGCCGTACAAGTAATACAAGCG683GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
KL4B.113L20F.060131T7 KL4B Nicotiana tabacum cDNA clone KL4B.113L20, mRNA sequence.
EB681521.1:428-447
ACAACAGATGCCGTACAAGTAATACAAGCG428GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
KP1B.112N18F.060117T7 KP1B Nicotiana tabacum cDNA clone KP1B.112N18, mRNA sequence.
EB682518.1:667-686
ACAACAGATGCCGTACAAGTAATACAAGCG667GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
AGN_ELP010xb11f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence.
FG135640.1:718-737
CACAACAGATGCCGTACAAGTAATACAGCG718GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGATCTTCT
AGN_ELP005xl09f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence.
FG137276.1:734-753
ACAACAGATGCCGTACAAGTAATACAAGCG734GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
AGN_ELP002xh15f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence.
FG138161.1:578-597
ACAACAGATGCCGTACAAGTAATACAAGCG578GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
AGN_ELP024xg08f1.ab1 AGN_ELP Nicotiana tabacum cDNA 5', mRNA sequence.
FG139450.1:767-786
ACAACAGATGCCGTACAAGTAATACAAGCG767GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGATCTTCT
AGN_PNL221df1_d7.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG194395.1:724-743
ACAACAGATGCCGTACAAGTAATACAAGCG724GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
AGN_PNL230cf1_f1.trimmed.seq AGN_PNL Nicotiana tabacum cDNA 5', mRNA sequence.
FG200783.1:510-529
ACAACAGATGCCGTACAAGTAATACAAGCG510GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
Solanum melongena mRNA, clone: SmFL27O04, 5'end.
FS085143.1:675-694
ACAACAGATGCTGTACAAGTTATACAAGCT675GCACAATTAGCTGGTGTTGGGCATGTTGCCATAATCTATGATGAATCTTC
KS24055C02 KS24 Capsicum annuum cDNA, mRNA sequence.
GD122969.1:124-143
ACAACAGATGCTGTACAAGTTATACAAGCT124GCACAATTAGCTGGTGTTGGGCATGTGGCCATAATCTATGATGAATCTTC
KS26047E02 KS26 Capsicum annuum cDNA, mRNA sequence.
GD133980.1:610-629
ACAACAGATGCTGTACAAGTTATACAAGCT610GCACAATTAGCTGGTGTTGGGCATGTGGCCATAATCTATGATGAATCTTC
NbTI09H2 Nicotiana benthamiana Tobacco mosaic virus-induced library (NbTIcDNA) Nicotiana benthamiana cDNA, mRNA sequence.
JZ723705.1:662-681
ACAACAGATGCCGTACAAGTAATACAAGCG662GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCT
NbTI15H2 Nicotiana benthamiana Tobacco mosaic virus-induced library (NbTIcDNA) Nicotiana benthamiana cDNA, mRNA sequence.
JZ724246.1:69-88
ACAACGGATGCCGTACAAGTAATACAAGCG69GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
TSA: Physalis peruviana Php00a06629.16582 mRNA sequence.
JO140654.1:648-667
ACAACAGATGCTGTACAAGTTATACAAGCT648GCACAATTAGCTGGTGTTGGGCATCTGGCCATAGTCTACGATGAATCTTC
TSA: Capsicum annuum MGMT_Contig5955, mRNA sequence.
JW056199.1:696-715
ACAACAGATGCTGTACAAGTTATACAAGCT696GCACAATTAGCTGGTGTTGGGCATGTGGCCATAATCTATGATGAATCTTC
TSA: Capsicum annuum MGMT_Contig41734 mRNA sequence.
JW091978.1:1572-1591
ACAACAGATGCTGTACAAGTTATACAAGCT1572GCACAATTAGCTGGTGTTGGGCATGTGGCCATAATCTATGATGAATCTTC
TSA: Capsicum annuum MASupSingCtng_8274, mRNA sequence.
JW162238.1:715-734
ACAACAGATGCTGTACAAGTTATACAAGCT715GCACAATTAGCTGGTGTTGGGCATGTGGCCATAATCTATGATGAATCTTC
LuSp108I17_1061063894185_TP POTATO-B-01-100-110KB Solanum phureja genomic clone LuSp108I17, genomic survey sequence.
GS295576.1:207-226
ACAACAGATGCTGTACAAGTTATACAAGCT207GCACAATTAGCTGGTGTTGGGCATGTGGCCATAGTCTATGATGAATCTTC
Nicotiana tabacum cDNA-AFLP-fragment BC4-M43-005.
AJ538734.1:314-333
ACAACAGATGCCGTACAAGTAATACAAGCG314GCACAATTAGCTGGTGTTGGACATGTGGCCATAGTCTATGATGAATCTTC
Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:34474998-34475017
ACAACAGATGCTGTACAAGTTATACAAGCT34474998GCACAATTAGCTGGTGTTGGGCATGTGGCCATAATCTATGATGAATCTTC
TSA: Capsicum annuum EJ_MegaContig_44990, mRNA sequence.
JW138748.1:1143-1162
GAAGATTCATCATAGATTATGGCCACATGC1143CCAACACCAGCTAATTGTGCAGCTTGTATAACTTGTACAGCATCTGTTGT
TSA: Nicotiana benthamiana isotig01232.Nb_leaf mRNA sequence.
KA737488.1:1067-1086
GAAGATTCATCATAGACTACGGCCACATGT1067CCAACACCAGCTAATTGTGCCGCTTGTATTACTTGTACGGCATCTGTTGT
TSA: Nicotiana benthamiana isotig01233.Nb_leaf mRNA sequence.
KA737489.1:826-845
GAAGATTCATCATAGACTATGGCCACATGT826CCAACACCAGCTAATTGTGCCGCTTGTATTACTTGTACGGCATCTGTTGT
LuSp108I17_1061063894185_TV POTATO-B-01-100-110KB Solanum phureja genomic clone LuSp108I17, genomic survey sequence.
GS347537.1:564-583
GAAGATTCATCATAGACTATGGCCACATGC564CCAACACCAGCTAATTGTGCAGCTTGTATAACTTGTACAGCATCTGTTGT
Solanum tuberosum cultivar P8 chromosome 6.
CP046679.1:4420787-4420806
GAAGATTCATCATAGACTATGGCCACATGC4420787CCAACACCAGCTAATTGTGCAGCTTGTAWAACTTGTACAGCATCTGTTGT
Solanum tuberosum cultivar MSH/14-112 chromosome 6.
CP046692.1:4420394-4420413
GWAGATTCATCATAGACTATGGCCACATGC4420394CCAACACCAGCTAATTGTGCAGCTTGTATAACTTGTACAGCATCTGTTGT
Solanum pinnatisectum cultivar CGN17745 chromosome 6.
CP047568.1:4419467-4419486
GAAGATTCATCATAGACTATGGCCACATGC4419467CCAACACCAGCTAATTGTGCAGCTTGTATAACTTGTACAGCATCTGTTGT
Solanum tuberosum cultivar Solyntus chromosome 6.
CP055239.1:5563727-5563746
GAAGATTCATCATAGACTATGGCCACATGC5563727CCAACACCAGCTAATTGTGCAGCTTGTATAACTTGTACAGCATCTGTTGT
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:219954356-219954375
GAAGATTCATCATAGATTATGGCCACATGC219954356CCAACACCAGCTAATTGTGCAGCTTGTATAACTTGTACAGCATCTGTTGT
Solanum verrucosum cultivar 11H23 chromosome 6.
CP133617.1:3919216-3919235
GAAGATTCATCATAGACTATGGCCACATGC3919216CCAACACCAGCTAATTGTGCAGCTTGTATAACTTGTACAGCATCTGTTGT
Solanum dulcamara genome assembly, chromosome: 8.
OX359259.1:5824007-5824026
GAAGATTCATCATAGACTATGGCCACATGC5824007CCAACACCAGCTAATTGTGCAGCTTGTATAACTTGTACAGCATCTGTTGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCACAATTAGCTGGTGTTGG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCACAATTAGCTGGTGTTGG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
1.809 | 1.800 | search_plus_done; http://172.18.8.135:50400/match?q=GCACAATTAGCTGGTGTTGG&k=0&no_gap=0&offset=0&limit=50
1.970 | 0.161 | search_minus_done; http://172.18.8.135:50400/match?q=CCAACACCAGCTAATTGTGC&k=0&no_gap=0&offset=0&limit=17
1.977 | 0.007 | cgi_end;

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