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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-11 23:17:47, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Brassica oleracea var. alboglabra EST, clone AAFC_WHRI_BoE02a018K14_T7.
AM391787.1:494-513
GAAGCCCCTTCATCACCTGCTCTGTCTCCG494GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTTCC
BNARO6GH_T3_024_B06_07DEC2006_046 Brassica napus BNARO6GH Brassica napus cDNA 5', mRNA sequence.
ES910911.1:53-72
GAAGCCCCTTCATCACCTGCTCTGTCTCCG53GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCCTTTTCC
36RDBRG_UP_082_F12_19JAN2006_086 Brassica rapa 36RDBRG Brassica rapa cDNA 5', mRNA sequence.
ES929689.1:559-578
GAAGCCCCTTCATCACCTGTTCTGTCTCCG559GCACCTCCTCGATCACAATCTCAACGATCCACGC
0096631 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV153359.1:555-574
GAAGCCCCTTCATCACCTGCTCTGTCTCCG555GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCCTTTTCC
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_3084.
FX693595.1:645-664
GAAGCCCCTTCATCACCTGTTCTGTCTCCG645GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_10037.
FX727017.1:721-740
GAAGCCCCTTCATCACCTGTTCTGTCTCCG721GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
Brassica napus putative beta-glucan elicitor receptor (Bger1), constans-like protein (CoL), and constans (Coa1) genes, complete cds.
AY280868.2:6515-6534
GAAGCCCCTTCATCACCTGTTCTGTCTCCG6515GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTTCC
Brassica napus genome assembly, chromosome: A10.
HG994364.1:16302365-16302384
GAAGCCCCTTCATCACCTGTTCTGTCTCCG16302365GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
Brassica napus genome assembly, chromosome: C09.
HG994373.1:58010741-58010760
GAAGCCCCTTCATCACCTGCTCTGTCTCCG58010741GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCCTTTTCC
Brassica rapa genome, scaffold: A10.
LR031577.1:13230017-13230036
GAAGCCCCTTCATCACCTGTTCTGTCTCCG13230017GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:56102669-56102688
GAAGCCCCTTCATCACCTGCTCTGTCTCCG56102669GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTTCC
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:15962745-15962764
GAAGCCCCTTCATCACCTGTTCTGTCTCCG15962745GCACCTCCTCGATCACAATCTCAACGATCCACGCGGTTTTGTCGTTTGCC
KBrH013F22R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH013F22, genomic survey sequence.
CW986864.1:342-361
GGCAAACGACAAAACCGCGTGGATCGTTGA342GATTGTGATCGAGGAGGTGCCGGAGACAGAACAGGTGATGAAGGGGCTTC
Brassica oleracea clone BOT01-36M16, WORKING DRAFT SEQUENCE, 2 ordered pieces.
AC240086.1:81943-81962
GGAAAAGGACAAAACCGCGTGGATCGTTGA81943GATTGTGATCGAGGAGGTGCCGGAGACAGAGCAGGTGATGAAGGGGCTTC
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:4472031-4472050
GGAAAACGACAAAACCGCGTGGATCGTTGA4472031GATTGTGATCGAGGAGGTGCCGGAGACAGAACAGGTGATGAAGGGGCTTC
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:7437473-7437492
GGAAAAGGACAAAACCGCGTGGATCGTTGA7437473GATTGTGATCGAGGAGGTGCCGGAGACAGAGCAGGTGATGAAGGGGCTTC
Dicrocoelium dendriticum genome assembly, chromosome: 1.
OX104063.1:4342321-4342340
TCGGGTTAGTATTTCAACCTATTAGTACTT4342321GATTGTGATCGAGGAGGTGCAACGTCCTCTTCGTCATTGTGATACGTAAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCACCTCCTCGATCACAATC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCACCTCCTCGATCACAATC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.363 | 0.354 | search_plus_done; http://172.18.8.135:50400/match?q=GCACCTCCTCGATCACAATC&k=0&no_gap=0&offset=0&limit=50
0.483 | 0.120 | search_minus_done; http://172.18.8.135:50400/match?q=GATTGTGATCGAGGAGGTGC&k=0&no_gap=0&offset=0&limit=38
0.486 | 0.003 | cgi_end;

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