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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 11:22:55, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_19161.
FX701253.1:1276-1295
TCAATGAATCCATAGCAAGCATTTACCCAA1276GCACCTGATTACTTCAAAGCAACCACATTTTTTCCTGTCTGAAAATACCA
TSA: Brassica rapa x Raphanus sativus RNA, contig: BB3_34918.
FX735811.1:1255-1274
TCAATGAATCCATAGCAAGCATTTACCCAA1255GCACCTGATTACTTCAAAGCAACCACATTTTTTCCTGTCTGAAAATACCA
Brassica napus cultivar Xiang5A chromosome 18.
CP123893.1:60254047-60254066
TCAAAGAATCCATAGCAAGCATTTACCCAA60254047GCACCTGATTACTTCAAAGCAACCACATTTTTTCCTATCTGAAAATACCA
BN25.060J08F011129 BN25 Brassica napus cDNA clone BN25060J08, mRNA sequence.
CD825375.1:458-477
TGGTATTTTCAGACAGGAAAAAATGTGGTT458GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCATTGA
BN45.046E15F011229 BN45 Brassica napus cDNA clone BN45046E15, mRNA sequence.
CD835671.1:228-247
TGGTATTTTCAGACAGGAAAAAATGTGGTT228GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCATTGA
16ACDHDS_UP_007_H07_08APR2004_049 Brassica napus 16ACDHDS Brassica napus cDNA 5', mRNA sequence.
CX280286.1:156-175
TGGTATTTTCAGATAGGAAAAAATGTGGTT156GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTGAA
Brassica oleracea var. viridis mRNA, clone: KALE-020M09, 5' end sequence.
DK463489.1:344-363
TGGTATTTTCAGATAGGAAAAAATGTGGTT344GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-075L11, 5' end sequence.
DK484500.1:536-555
TGGTATTTTCAGATAGGAAAAAATGTGGTT536GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-092I17, 5' end sequence.
DK490941.1:344-363
TGGTATTTTCAGATAGGAAAAAATGTGGTT344GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-106G08, 5' end sequence.
DK496242.1:344-363
TGGTATTTTCAGATAGGAAAAAATGTGGTT344GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-109D22, 5' end sequence.
DK497333.1:250-269
TGGTATTTTCAGATAGGAAAAAATGTGGTT250GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-115P01, 5' end sequence.
DK499883.1:344-363
TGGTATTTTCAGATAGGAAAAAATGTGGTT344GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-142H21, 5' end sequence.
DK510035.1:344-363
TGGTATTTTCAGATAGGAAAAAATGTGGTT344GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Brassica oleracea var. viridis mRNA, clone: KALE-156B23, 5' end sequence.
DK515245.1:530-549
TGGTATTTTCAGATAGGAAAAAATGTGGTT530GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
BMSA01-T7-12-H01 Brassica napus Full-length cDNA Library Brassica napus cDNA, mRNA sequence.
EG020780.1:358-377
TGGTATTTTCAGATAGGAAAAAATGTGGTT358GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
0082406 Brassica napus Bud library Brassica napus cDNA, mRNA sequence.
EV158544.1:372-391
TGGTATTTTCAGACAGGAAAAAATGTGGTT372GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCATTGA
BR018982 callus cDNA library KBCG Brassica rapa subsp. pekinensis cDNA clone KBCG-154F11 5', mRNA sequence.
EX034338.1:240-259
TGGTATTTTCAGACAGGAAAAAATGTGGTT240GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCATTGA
BR121330 root cDNA library KHRT Brassica rapa subsp. pekinensis cDNA clone KHRT-85D10 5', mRNA sequence.
EX137500.1:186-205
TGGTATTTTCAGACAGGAAAAAATGTGGTT186GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCATTGA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB086B23, complete sequence.
AC232530.1:91545-91564
TGGTATTTTCAGACAGGAAAAAATGTGGTT91545GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCATTGA
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:12697271-12697290
TGGTATTTTCAGACAGGAAAAAATGTGGTT12697271GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCATTGA
Brassica napus genome assembly, chromosome: A03.
HG994357.1:12603861-12603880
TGGTATTTTCAGACAGGAAAAAATGTGGTT12603861GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCATTGA
Brassica napus genome assembly, chromosome: C03.
HG994367.1:18988237-18988256
TGGTATTTTCAGATAGGAAAAAATGTGGTT18988237GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Brassica oleracea HDEM genome, scaffold: C3.
LR031872.1:18834493-18834512
TGGTATTTTCAGATAGGAAAAAATGTGGTT18834493GCTTTGAAGTAATCAGGTGCTTGGGTAAATGCTTGCTATGGATTCTTTGA
Volucella inflata genome assembly, chromosome: 2.
OV743717.1:102978077-102978096
CTATTTCGTATCTTCGTGTGGTAGAATTGA102978077GCTTTGAAGTAATCAGGTGCACTAAAAAATTATCCTAAGCTTCAATTGGA
Eupithecia exiguata genome assembly, chromosome: 11.
OX352237.1:9247502-9247521
ATCTTTGACGTATATTTCACGTTATTAATA9247502GCTTTGAAGTAATCAGGTGCTTTCTGCTAAAATAGTAACCGCATGAGGAA
Xestospongia bergquistia genome assembly, chromosome: 2.
OZ014412.1:11835642-11835661
CTGGAGTCATTAAAGTGTGAATGAAACTAG11835642GCTTTGAAGTAATCAGGTGCTAAATCCACTTATGAATTTTGATTAACTAG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCACCTGATTACTTCAAAGC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCACCTGATTACTTCAAAGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.234 | 0.225 | search_plus_done; http://172.18.8.135:50400/match?q=GCACCTGATTACTTCAAAGC&k=0&no_gap=0&offset=0&limit=50
1.043 | 0.810 | search_minus_done; http://172.18.8.135:50400/match?q=GCTTTGAAGTAATCAGGTGC&k=0&no_gap=0&offset=0&limit=47
1.059 | 0.015 | cgi_end;

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