GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

CGN-150 Pericarp Coffea canephora cDNA clone cccp16k5 5', mRNA sequence.
DV663471.1:187-214

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA187GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-2417 Pericarp Coffea canephora cDNA clone cccp10g22 5', mRNA sequence.
DV665055.1:403-430

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA403GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-3615 Pericarp Coffea canephora cDNA clone cccp10d23 5', mRNA sequence.
DV665933.1:416-443

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA416GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-5745 Pericarp Coffea canephora cDNA clone cccp22e21 5', mRNA sequence.
DV667485.1:393-420

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA393GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-6389 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w3a23 5', mRNA sequence.
DV667945.1:379-406

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA379GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-6492 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w4a10 5', mRNA sequence.
DV668027.1:397-424

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA397GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTG

CGN-7679 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w5f22 5', mRNA sequence.
DV672197.1:405-432

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA405GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-12414 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w5p17 5', mRNA sequence.
DV675442.1:313-340

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA313GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-13467 Cherry of Early Development Stage Coffea canephora cDNA clone cccs18w7e23 5', mRNA sequence.
DV676626.1:210-237

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA210GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-17654 Pericarp Coffea canephora cDNA clone cccp18c24 5', mRNA sequence.
DV679444.1:400-427

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA400GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-19204 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w29b11 5', mRNA sequence.
DV680517.1:383-410

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA383GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-21831 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w22h5 5', mRNA sequence.
DV682165.1:394-421

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA394GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-23437 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w27e10 5', mRNA sequence.
DV683176.1:291-318

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA291GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-40469 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w12e14 5', mRNA sequence.
DV695564.1:346-373

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA346GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-49194 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w25k16 5', mRNA sequence.
DV702754.1:389-416

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA389GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-49625 Seed of Late Development Stage Coffea canephora cDNA clone cccs46w25j15 5', mRNA sequence.
DV703121.1:306-333

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA306GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-51371 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w2o4 5', mRNA sequence.
DV704552.1:416-443

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA416GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-51992 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w10o19 5', mRNA sequence.
DV705042.1:406-433

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA406GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-56552 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w13h13 5', mRNA sequence.
DV708510.1:406-433

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA406GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-57590 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w19j24 5', mRNA sequence.
DV709319.1:414-441

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA414GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-57974 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w18h8 5', mRNA sequence.
DV709623.1:202-229

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA202GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CGN-60750 Cherry of Early Development Stage Coffea canephora cDNA clone cccwc22w25h13 5', mRNA sequence.
DV711844.1:406-433

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA406GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CC-L01_046_G05 Coffea young leaves Coffea canephora cDNA clone CC-L01_046_G05, mRNA sequence.
EE194839.1:399-426

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA399GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CC-F01_018_L14 Cherry of different development stage Coffea canephora cDNA clone CC-F01_018_L14, mRNA sequence.
EE200137.1:341-368

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA341GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CC-F01_019_I12 Cherry of different development stage Coffea canephora cDNA clone CC-F01_019_I12, mRNA sequence.
EE200400.1:375-402

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA375GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

ctsc1c3 Tomato Seed Library [C] Solanum lycopersicum cDNA clone cTSC-1-C3 5', mRNA sequence.
GO373835.1:444-471

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA444GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

TransId-211412 CACATN1 Coffea arabica cDNA clone CACATN1-3I94TV, mRNA sequence.
GT000919.1:92-119

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA92GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

TransId-207508 CACATN1 Coffea arabica cDNA clone CACATN1-2705TV, mRNA sequence.
GT002543.1:375-402

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA375GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

TransId-234528 CAET42MIX Coffea arabica cDNA clone CAET42MIX-CFEWW08TV, mRNA sequence.
GT007192.1:431-458

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA431GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

TransId-260773 CAHT1343PER Coffea arabica cDNA clone CAHT1343PER-CAHTE57TV, mRNA sequence.
GT016573.1:420-447

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA420GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

TransId-279097 CarCatBudEnri2 Coffea arabica cDNA clone CarCatBudEnri2_57-D10-PAL17d, mRNA sequence.
GT020183.1:429-456

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA429GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CA00-XX-CA1-007-H10-BG.F Coffea arabica CA1 Coffea arabica cDNA clone CA00-XX-CA1-007-H10-BG, mRNA sequence.
GT688530.1:376-403

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA376GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

CA00-XX-CA1-043-C10-MC.F Coffea arabica CA1 Coffea arabica cDNA clone CA00-XX-CA1-043-C10-MC, mRNA sequence.
GT688531.1:315-342

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA315GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

CA00-XX-FB2-040-A10-AB.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-040-A10-AB, mRNA sequence.
GT703883.1:402-429

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA402GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CA00-XX-FB2-016-H07-BM.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-016-H07-BM, mRNA sequence.
GT703884.1:347-374

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA347GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CA00-XX-FB2-014-E12-AB.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-014-E12-AB, mRNA sequence.
GT703885.1:331-358

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA331GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CA00-XX-FB2-075-D10-CC.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-075-D10-CC, mRNA sequence.
GT703886.1:387-414

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA387GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CA00-XX-FB2-007-C10-SB.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-007-C10-SB, mRNA sequence.
GT703887.1:371-398

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA371GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

CA00-XX-FB2-039-D04-QH.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-039-D04-QH, mRNA sequence.
GT703888.1:317-344

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA317GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

CA00-XX-FB2-033-C06-RF.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-033-C06-RF, mRNA sequence.
GT703889.1:402-429

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA402GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

CA00-XX-FB2-036-F09-BM.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-036-F09-BM, mRNA sequence.
GT703890.1:322-349

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA322GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

CA00-XX-FB1-045-B06-JM.F Coffea arabica FB1 Coffea arabica cDNA clone CA00-XX-FB1-045-B06-JM, mRNA sequence.
GT709665.1:348-375

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA348GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CA00-XX-RM1-034-A02-EP.F Coffea arabica RM1 Coffea arabica cDNA clone CA00-XX-RM1-034-A02-EP, mRNA sequence.
GT710759.1:375-402

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA375GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAATAAC

CA00-XX-RT8-058-F07-EZ.F Coffea arabica RT8 Coffea arabica cDNA clone CA00-XX-RT8-058-F07-EZ, mRNA sequence.
GT728451.1:612-639

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA612GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAC

CA00-XX-RT8-066-A11-SB.F Coffea arabica RT8 Coffea arabica cDNA clone CA00-XX-RT8-066-A11-SB, mRNA sequence.
GT728452.1:598-625

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA598GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCAGTTGAAGAAGTAA

CA00-XX-RX1-035-G11-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-035-G11-EB, mRNA sequence.
GT730814.1:76-103

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA76GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CA00-XX-RX1-027-C08-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-027-C08-EB, mRNA sequence.
GT730816.1:402-429

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA402GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

CA00-XX-RX1-006-C09-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-006-C09-EB, mRNA sequence.
GT730817.1:374-401

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA374GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

AFP0AAA2YE02FM1 BAC end, cultivar HD200-94 of Coffea canephora, genomic survey sequence.
FO568453.1:377-404

GAAACTCCTGCAGTCAAAGAAGCTCCAGCA377GCAGAAGAAGCACCAGTAGCAGAAGAAGCAGCCAAGATCGAGCCTGTTGAAGAAGTAA

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Debug Info:

0.008 | 0.008 | search_start;
3.118 | 3.110 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGAAGAAGCACCAGTAGCAGAAGAAG&k=0&no_gap=0&offset=0&limit=50
3.183 | 0.065 | search_minus_done; http://172.18.8.135:50400/match?q=CTTCTTCTGCTACTGGTGCTTCTTCTGC&k=0&no_gap=0&offset=0&limit=0
3.183 | 0.000 | cgi_end;

Summary:

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