GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:15:10, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Malus x robusta genome assembly, chromosome: 5.
OY720329.1:32008873-32008896
GAAAATGTACATGGTAAACAAAAAATTAAA32008873GCAGACACTCACTCACTATCTCTCTCTCTCTCTCTCTCTCGATATTTGATATTA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:8969020-8969043
AATATCGAGAGAGAGAGAGAGAGAGAGAGA8969020GAGAGATAGTGAGTGAGTGTCTGCTTTAATTATTTGTTTACCATGTACATTTTC
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:9804228-9804251
ATATCAAATATCGAGAGAGAGAGAGAGAGA9804228GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:9188129-9188152
TAATATCAAATATCGAGAGAGAGAGAGAGA9188129GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:10006878-10006901
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA10006878GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:9098761-9098784
TAATATCAAATATCGAGAGAGAGAGAGAGA9098761GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:9218092-9218115
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA9218092GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC
Malus domestica genome assembly, chromosome: 11.
OU696687.1:9903107-9903130
TAATATCAAATATCGAGAGAGAGAGAGAGA9903107GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC
Malus domestica genome assembly, chromosome: 11.
OU744552.1:9948422-9948445
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA9948422GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC
Malus domestica genome assembly, chromosome: 11.
OU744963.1:9720128-9720151
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA9720128GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC
Malus domestica genome assembly, chromosome: 11.
OU745001.1:9822675-9822698
GAGAGAGAGAGAGAGAGAGAGAGAGAGAGA9822675GAGAGATAGTGAGTGAGTGTCTGCTTTAATTTTTTGTTTACCATGTACATTTTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAGACACTCACTCACTATCTCTC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGACACTCACTCACTATCTCTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.096 | 0.087 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGACACTCACTCACTATCTCTC&k=0&no_gap=0&offset=0&limit=50
0.113 | 0.017 | search_minus_done; http://172.18.8.135:50400/match?q=GAGAGATAGTGAGTGAGTGTCTGC&k=0&no_gap=0&offset=0&limit=49
0.119 | 0.007 | cgi_end;

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