GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 02:48:41, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Sequence 74898 from patent US 9029636.
HK983961.1:2689-2709
ACGAATGCACCAGATATCATGGCACTGTAT2689GCAGAGACTCCAGCAAGTAGAGAGACCGAAAGTGGTGGCTATTCTATCCCT
sam20c06.y1 Gm-c1068 Glycine max cDNA clone SOYBEAN CLONE ID: Gm-c1068-5124 5', mRNA sequence.
BM890896.1:412-432
ACGAATGCACCAGATATCATGGCACTGTAT412GCAGAGACTCCAGCAAGTAGAGAGACCGAAAGTGGTGGCTATTCTATCCCT
GD_TBa295D09.R GD_TBa Glycine dolichocarpa genomic 3', genomic survey sequence.
HN498659.1:509-529
ACGAATGCACCAGATATCATGGCACTCTAT509GCAGAGACTCCAGCAAGTAGAGAGAGCGAAAGTGGTAGCTATTCTATCCCT
Glycine max cultivar Williams 82 chromosome 16.
CP126441.1:7705582-7705602
ACGAATGCACCAGATATCATGGCACTGTAT7705582GCAGAGACTCCAGCAAGTAGAGAGACCGAAAGTGGTGGCTATTCTATCCCT
Apodemus sylvaticus genome assembly, chromosome: 20.
OX359317.1:50820512-50820532
TGATTCACCTGATGTTCGATGACTACGTGC50820512TCTACTTGCTGGAGTCTCTGCATTGTCAGGAGCGAGCCAACGAGCTCATGC
GS_Ba069C18.R GS_Ba Glycine syndetika genomic 3', genomic survey sequence.
HN776039.1:668-688
AGGGATAGAATAGCTACCACTTTCGCTCTC668TCTACTTGCTGGAGTCTCTGCATAGAGTGCCATGATATCTGGTGCATTCGT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAGAGACTCCAGCAAGTAGA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGAGACTCCAGCAAGTAGA | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.192 | 0.184 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGAGACTCCAGCAAGTAGA&k=0&no_gap=0&offset=0&limit=50
0.270 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=TCTACTTGCTGGAGTCTCTGC&k=0&no_gap=0&offset=0&limit=46
0.271 | 0.002 | cgi_end;

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