GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 07:55:57, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Gallus gallus breed Huxu chromosome 4.
CP100558.1:31899976-31899993
GCCCTCCACTGCCCCCACTGAGCAGCAGCA31899976GCAGCAAAGCCCTTAGGCCCTGGCTTTGGCACTATAACATCCACTTAA
Coregonus sp. 'balchen' genome assembly, chromosome: 13.
LR778265.1:33085589-33085606
GAGACCTCGACAAACAAAAGGAAGAATGAG33085589GCAGCAAAGCCCTTAGGCAAGCCGTAAGTAATTAAAAAGGCCTGTAAA
Fringilla coelebs genome assembly, chromosome: 22.
OY740746.1:2641428-2641445
CTTAGGAATTTAGCAGCAAAGGTTCATTTA2641428GCAGCAAAGCCCTTAGGCACTATTTGCAGCCGCTTCTCAGGCTGCTCC
AGENCOURT_8751106 NIH_MGC_130 Mus musculus cDNA clone IMAGE:6333917 5', mRNA sequence.
BQ895785.1:858-875
CCTTTCCCCCCTAGCTGGGGTACACCCCAG858GCAGCAAAGCCCTTAGGCTTCCC
Elaeis guineensis EST, clone (6lib)_isotig24375.
LM615066.1:1910-1927
TGTAAATATTTTGCCTGTCTTGCAATTTTT1910GCAGCAAAGCCCTTAGGCCGAACATCACTATCATCCTCATCAGTATCA
Helleia helle genome assembly, chromosome: 8.
OY971422.1:12651549-12651566
TGTTGTAGCTAAGCCCTTAGGCTGTGTGTT12651549GCAGCAAAGCCCTTAGGCTGTGTCGCCGCGAAACGCATAGGCTGTTTG
Salmo trutta genome assembly, chromosome: 19.
LR584427.1:24918851-24918868
TTTACAGGCCTATTTAATTACTTACAGCTT24918851GCCTAAGGGCTTTGCTGCCTCATTCTTTCTTTTGTTTGTCGAGGTCTC
Microcaecilia unicolor genome assembly, chromosome: 14.
LR594645.1:50573976-50573993
AAAAATTAATTTGAGTTATTTGCATTTTAT50573976GCCTAAGGGCTTTGCTGCAGATAACGTGAGCTAATCTTTGGTAAAAGA
Nannobrachium achirus genome assembly, chromosome: 4.
OY997641.1:46610226-46610243
AAAACTAGATACCGCCTGCCTGGCTGAGTT46610226GCCTAAGGGCTTTGCTGCCACCTGTTATAGCACCACCATGAGGCTGAT
CHO_OF743xa09f1.ab1 CHO_OF Nicotiana tabacum genomic 5', genomic survey sequence.
ET815131.1:213-230
CCTTATTATATGAACTTAAGAGTCACATTT213GCCTAAGGGCTTTGCTGCCACATTGAGTTCCATTAGGCTTATCCAAAG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAGCAAAGCCCTTAGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGCAAAGCCCTTAGGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.230 | 0.222 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGCAAAGCCCTTAGGC&k=0&no_gap=0&offset=0&limit=50
0.315 | 0.085 | search_minus_done; http://172.18.8.135:50400/match?q=GCCTAAGGGCTTTGCTGC&k=0&no_gap=0&offset=0&limit=44
0.318 | 0.003 | cgi_end;

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