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Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-04 07:47:46, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

CGN-23246 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w21g10 5', mRNA sequence.
DV683049.1:532-554
GTTGCAGCAACAGCAGCTGCAACAGCTACA532GCAGCAACAATCACTTCCACAGCTGCAGCAGCAGCAGCAGCACATGCCACAGT
CGN-23851 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w21h2 5', mRNA sequence.
DV683426.1:532-554
GTTGCAGCAACAGCAGCTGCAACAGCTACA532GCAGCAACAATCACTTCCACAGCTGCAGCAGCAGCAGCAGCACATGCCACAGT
CGN-24931 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w32n3 5', mRNA sequence.
DV684148.1:532-554
GTTGCAGCAACAGCAGCTGCAACAGCTACA532GCAGCAACAATCACTTCCACAGCTGCAGCAGCAGCAGCAGCACATGCCACAGT
CGN-25769 Seed of Middle Development Stage Coffea canephora cDNA clone cccs30w31n18 5', mRNA sequence.
DV684730.1:78-100
GTTGCAGCAACAGCAGCTGCAACAGCTACA78GCAGCAACAATCACTTCCACAGCTGCAGCAGCAGCAGCAGCACATGCCACAGT
TransId-221985 CACATN1 Coffea arabica cDNA clone CACATN1-6V56TV similar to Putative phloem transcription factor M1 - Apium graveolens (Celery), mRNA sequence.
GR996325.1:678-700
GCTGCAACAGCTACAGCAGCAACAGCTACA678GCAGCAACAATCACTTCCACAGCTGCAGCAGCAGCGGCAGCACATGCCACAGT
CC00-XX-SH3-036-G08-EM.F Coffea canephora SH3 Coffea canephora cDNA clone CC00-XX-SH3-036-G08-EM, mRNA sequence.
GT645808.1:116-138
GTTGCAGCAACAGCAGCTGCAACAGCTACA116GCAGCAACAATCACTTCCACAGCTGCAGCAGCAGCAGCAGCACATGCCACAGT
CA00-XX-FR2-028-H12-EQ.F Coffea arabica FR2 Coffea arabica cDNA clone CA00-XX-FR2-028-H12-EQ, mRNA sequence.
GT704344.1:555-577
GCTGCAACAGCTACTGCAGCAACAGCTACC555GCAGCAACAATCACTTCCACAGCTGCTGCAGCAGCAGCAGCAC
CA00-XX-SH2-038-C12-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-038-C12-EM, mRNA sequence.
GT716397.1:742-764
GTTGCAGCAACAGCAGCTGCAACAGCTACA742GCAGCAACAATCACTTCCACAGCTGCAGCAGCAGCAGCAGCACATGCCACAGT
CCES27 Coffee EST-SSR sequence Coffea canephora STS cDNA, sequence tagged site.
GF110679.1:976-998
GTTGCAGCAACAGCAGCTGCAACAGCTACA976GCAGCAACAATCACTTCCACAGCTGCAGCAGCAGCAGCAGCACATGCCACAGT
Meandrina meandrites genome assembly, chromosome: 10.
OY855912.1:1611063-1611085
ACAGTATCAAGCACCTCCACAACAGACACA1611063GCAGCAACAATCACTTCCACAGCAGACAAAGGTTCAACAAAAGCCCGCTCCTA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAGCAACAATCACTTCCACAGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGCAACAATCACTTCCACAGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.121 | 1.113 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGCAACAATCACTTCCACAGC&k=0&no_gap=0&offset=0&limit=50
1.198 | 0.077 | search_minus_done; http://172.18.8.135:50400/match?q=GCTGTGGAAGTGATTGTTGCTGC&k=0&no_gap=0&offset=0&limit=40
1.198 | 0.000 | cgi_end;

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