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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:08:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Cenchrus purpureus cultivar elephant grass chromosome A6.
CP053459.1:36929799-36929818
CGGGGCGGCGGGGGCGGGCATAAGAAGGAA36929799GCAGCATGAAGGAGAGGAGTGATCTAGGATTTAGGTGTGTGGATCCAAAA
Chlorella sorokiniana strain SLA-04 chromosome 8.
CP084609.1:1343753-1343772
GGTGCGTGGGCGCTGCTGTCGGGCACCGAG1343753GCAGCATGAAGGAGAGGAGTCGCCGGCGCAGCTTGGCGAACCGACTCTGC
Gossypium herbaceum isolate Zhongcao1 chromosome 13.
CP106688.1:8357938-8357957
TATTTTGCAGTGAGAGTATGACCTTTCCGG8357938GCAGCATGAAGGAGAGGAGTGTCACCTGCATTTTCAATTAATTCAAGAGT
Gossypium bickii isolate GPG1lz chromosome 13.
CP106709.1:9646735-9646754
TATTTTGCAGTGAGAGTATGACCTTGCCGG9646735GCAGCATGAAGGAGAGGAGTGTCACCTGCATTTTCAATTAATTCAAGAAT
Gossypium rotundifolium isolate GPK201 chromosome 13.
CP106734.1:9493178-9493197
TATTTTGCAGTGAGAGTATGACCTTGCCGG9493178GCAGCATGAAGGAGAGGAGTGTCACCTGCATTTTCAATTAATTCAAGAAT
Cenchrus americanus genome assembly, chromosome: PMC23DB6.
OX387244.1:103873828-103873847
CGGGGTGGCGGGGGCATACATAAGGAGGAA103873828GCAGCATGAAGGAGAGGAGTAAGCTAGGATTTAGGTGTGTGGATAAAAAA
Cenchrus americanus genome assembly, chromosome: Pg6.
OZ001402.1:109248802-109248821
CGGGGTGGCGGGGGCATACATAAGGAGGAA109248802GCAGCATGAAGGAGAGGAGTAAGCTAGGATTTAGGTGTGTGGATAAAAAA
Cenchrus americanus genome assembly, chromosome: Pg6.
OZ001410.1:107995041-107995060
CGGGGTGGCGGGGGCATACATAAGGATGAA107995041GCAGCATGAAGGAGAGGAGTAAGCTAGGATTTAGGTGTGTGGATAAAAAA
Psittacula echo genome assembly, chromosome: 1.
OY725420.1:68803860-68803879
TTCAGAAACCTCCTAGGTAAGTCCCAGTGG68803860ACTCCTCTCCTTCATGCTGCCTCCAGGAATTTCTCAGGGCTTCTGTGTTG
GA__Ed0042D12f Gossypium arboreum 7-10 dpa fiber library Gossypium arboreum cDNA clone GA__Ed0042D12f, mRNA sequence.
BQ411750.1:262-281
GATGTGAACACAAAAGATGAAGATGGTGAC262ACTCCTCTCCTTCATGCTGCCCGGAAAGTCATACTCTCACTGCAAAATAC
GR__Ea01N04.f GR__Ea Gossypium raimondii cDNA clone GR__Ea01N04 5', mRNA sequence.
CO084950.1:317-336
GATGTGAACACAAAAGATGAAGATGGTGAC317ACTCCTCTCCTTCATGCTGCCCGGCAAGGTCATACTCTCACTGCAAAATA
CM073D02 Cotton Lambda Zap Express Library Gossypium hirsutum cDNA, mRNA sequence.
DR459157.1:317-336
GATGTGAACACAAAAGATGAAGATGGTGAC317ACTCCTCTCCTTCATGCTGCCCGGAAAGGTCATACTCTCACTGCAAAATA
EST1067700 GH_TMO Gossypium hirsutum cDNA, mRNA sequence.
DT557060.1:102-121
GATGTGAACACAAAAGATGAAGATGGTGAC102ACTCCTCTCCTTCATGCTGCCCGGAAAGGTCATACTCTCACTGCAAAATA
EST001840 Gossypium barbadense L. line 3-79 fiber normalized cDNA library Gossypium barbadense cDNA clone 08-B20 5', mRNA sequence.
GR708640.1:208-227
AAAGATGAAGATGTTGAAAATGCAGGTGAC208ACTCCTCTCCTTCATGCTGCCCGGAAAGGTCATACTCTCACTGCAAAATA
H09-G09301031-4-38-9 cDNA Library of Shixiya I in the Whole-life Cycle Gossypium arboreum cDNA clone H09-G09301031-4-38-9, mRNA sequence.
JG841236.1:327-346
GATGTGAACACAAAAGATGAAGATGGTGAC327ACTCCTCTCCTTCATGCTGCCCGGAAAGGTCATACTCTCACTGCAAAATA
ndcxe0_0012_H10.ab1 Upland cotton seedling roots at 3h control (ndcxe) Gossypium hirsutum cDNA 5', mRNA sequence.
JZ380586.1:339-358
AAAGATGAAGATGTTGAAAATGCAGGTGAC339ACTCCTCTCCTTCATGCTGCCCGGAAAGGTCATACTCTCACTGCAAAATA
Gossypioides kirkii chromosome KI_13.
CP032255.1:38129714-38129733
ATTCTTGAATTACTTAAAAATGCAGGTGAG38129714ACTCCTCTCCTTCATGCTGCCCGGCAAGGTCATACTCTCACTGCAAAATA
Gossypium raimondii isolate D5-4 chromosome D5_13.
CP032565.1:52262206-52262225
ATTCTTGAATTAATTGAAAATGCAGGTGAC52262206ACTCCTCTCCTTCATGCTGCCCGGCAAGGTCATACTCTCACTGCAAAATA
Gossypium turneri isolate D10-2 chromosome D10_13.
CP032583.1:54215331-54215350
AGTCTTGAATTAATTGAAAATGCAGGTGAC54215331ACTCCTCTCCTTCATGCTGCCCGGCAAGGTCATACTCTCACTGCAAAATA
Gossypium herbaceum isolate GPA1alz chromosome 13.
CP106700.1:115311358-115311377
ACTCTTGAATTAATTGAAAATGCAGGTGAC115311358ACTCCTCTCCTTCATGCTGCCCGGAAAGGTCATACTCTCACTGCAAAATA
Ferdinandea cuprea genome assembly, chromosome: 3.
OY754960.1:16206034-16206053
ACACCTGACTGTGGTAAAAACAAAATACCT16206034ACTCCTCTCCTTCATGCTGCAAATGCACACTTAGTCCGATTAAAAAATAC

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAGCATGAAGGAGAGGAGT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGCATGAAGGAGAGGAGT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.160 | 0.152 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGCATGAAGGAGAGGAGT&k=0&no_gap=0&offset=0&limit=50
0.630 | 0.470 | search_minus_done; http://172.18.8.135:50400/match?q=ACTCCTCTCCTTCATGCTGC&k=0&no_gap=0&offset=0&limit=42
0.639 | 0.009 | cgi_end;

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