GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-03-14 20:59:37, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

RR2B964TF RR2(MS) Raphanus raphanistrum subsp. raphanistrum cDNA 5', mRNA sequence.
EV538745.1:686-705
AAGTTGTTAGTAATAGGTTTGCACTTAAGA686GCAGCCTCAAGAAAAGATCGTTTAGCGATGCTGTTCTTGCTGATGAAGAT
RR4CD25TF RR4(PB) Raphanus raphanistrum subsp. landra cDNA 5', mRNA sequence.
EX772204.1:513-532
AAGTTGTTAGTAATAGGTTTGCACTTAAGA513GCAGCCTCAAGAAAAGATCGTTTAGCGATGCTGTTCTTGCTGATGAAGAT
Raphanus sativus mRNA, clone: RSCS05A19, 5' end sequence.
FY447576.1:464-483
AAGTTGTTAGTAATAGGTTTGCACTTAAGA464GCAGCCTCAAGAAAAGATCGTTTAGCGATGCTGTTCTTGCTGATGAAGAT
TSA: Raphanus sativus RS10605 mRNA sequence.
JT795152.1:457-476
AAGTTGTTAGTAATAGGTTTGCACTTAAGA457GCAGCCTCAAGAAAAGATCGTTTAGCGATGCTGTTCTTGCTGATGAAGAT
RR4CD25JQ RR4(PB) Raphanus raphanistrum subsp. landra cDNA 3', mRNA sequence.
EX776209.1:406-425
ATCTTCATCAGCAAGAACAGCATCGCTAAA406CGATCTTTTCTTGAGGCTGCTCTTAAGTGCAAACCTATTACTAACAACTT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAGCCTCAAGAAAAGATCG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGCCTCAAGAAAAGATCG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.424 | 0.416 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGCCTCAAGAAAAGATCG&k=0&no_gap=0&offset=0&limit=50
0.603 | 0.179 | search_minus_done; http://172.18.8.135:50400/match?q=CGATCTTTTCTTGAGGCTGC&k=0&no_gap=0&offset=0&limit=46
0.604 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).