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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:06:59, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_31022.
FX719442.1:3-22
CG3GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Prunus dulcis DNA, pseudomolecule Pd05.
AP019301.1:990791-990810
ACGGAACCAATAGGAAGTTTTTATAGCATT990791GCAGCTGGGGATATTTATTCATGTGTTTCTACAAAGAGGGCATGGTTGAA
Brassica napus aintegumenta 2 mRNA, complete cds.
DQ211970.1:217-236
AGCTATGGAGTTTGCTATGGATCTAACTCG217GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Brassica napus genome assembly, chromosome: A08.
HG994362.1:19689592-19689611
AGCTATGGAGTTTGCTATGGATCTAACTCG19689592GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Brassica rapa genome, scaffold: A08.
LR031575.1:18671863-18671882
AGCTATGGAGTTTGCTATGGATCTAACTCG18671863GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Brassica rapa genome assembly, chromosome: A08.
LS974624.2:24410270-24410289
AGCTATGGAGTTTGCTATGGATCTAACTCG24410270GCAGCTGGGGATATTTATTCTCAAATGTCCGTGATGCCACTCAGATCTGA
Tenthredo notha genome assembly, chromosome: 2.
OU611907.1:21442078-21442097
ATGGATTCCGAAGAAACACGCAAACAACAC21442078GCAGCTGGGGATATTTATTCGTCCCATTCCCTTCCGTTCGTTCTTCTTCA
Athalia rosae genome assembly, chromosome: 2.
OU795001.1:1928847-1928866
ATGGATTCCAAAGAAACACGCAAACAACAC1928847GCAGCTGGGGATATTTATTCGTCCCATTCCCCTTCCGCCCTCAAACTTCC
Tenthredo mesomela genome assembly, chromosome: 3.
OX031015.1:48590777-48590796
ATGGATTCCGAAGAAACACGCAAACAACAC48590777GCAGCTGGGGATATTTATTCGTCCCATTCCCTTCCGTCCGTTCTTCTTTG
Rhogogaster chlorosoma genome assembly, chromosome: 3.
OX101799.1:27648553-27648572
ATGGATTCCGAAGAAACACGCAAACAACAC27648553GCAGCTGGGGATATTTATTCGTCGCCCATTCCCTTCCGTCCGTTCTTCTT
Phymatocera aterrima genome assembly, chromosome: 4.
OY720662.1:2879322-2879341
ATGGATTCCGAAGAAACACGCAAACAACAC2879322GCAGCTGGGGATATTTATTCGTCCCATTCCAAGTTCCCTTATGCGCGTTT
KBrH049F15R KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH049F15, genomic survey sequence.
DX911925.1:581-600
TCAGATCTGAGTGGCATCACGGACATTTGA581GAATAAATATCCCCAGCTGCCGAGTTAGATCCATAGCAAACTTCATAGCT
Brassica rapa subsp. pekinensis clone KBrB126H02, complete sequence.
CU928182.1:5414-5433
TCAGATCTGAGTGGCATCACGGACATTTGA5414GAATAAATATCCCCAGCTGCCGAGTTAGATCCATAGCAAACTCCATAGCT
Brassica napus cultivar Xiang5A chromosome 7.
CP123882.1:6815720-6815739
TCAGATCTGAGTGGCATCACGGACATTTGA6815720GAATAAATATCCCCAGCTGCCGAGTTAGATCCATAGCAAACTCCATAGCT
Tenthredo distinguenda genome assembly, chromosome: 5.
OX384534.1:1189981-1190000
AAGAACGGAGGGACGGGAAGGGAATGGGAC1189981GAATAAATATCCCCAGCTGCGTGTTGTTTGCGTGTTTCTTCGGAATCCAT
Macrophya alboannulata genome assembly, chromosome: 1.
OX451206.1:1511195-1511214
GCGAAGGAAGGAGAAATAAGGGAATGGGAC1511195GAATAAATATCCCCAGCTGCGTGTTGTTTGCGTGTTTCTTCGGAATCCAT
Macrophya annulata genome assembly, chromosome: 3.
OZ001259.1:2104936-2104955
AAGAAAGATGGAAAAATAAGGGAATGGGAC2104936GAATAAATATCCCCAGCTGCGTGTTGTTTGCGTGTTTCTTCGGAATCCAT
Athalia cordata genome assembly, chromosome: 1.
OZ010625.1:34929114-34929133
TGGAAGTTTGAGGGCGGAAGGGAATGAGAC34929114GAATAAATATCCCCAGCTGCGTGTTGTTTGCGTGTTTCTTTGGAATCCAT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAGCTGGGGATATTTATTC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGCTGGGGATATTTATTC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.269 | 0.261 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGCTGGGGATATTTATTC&k=0&no_gap=0&offset=0&limit=50
0.411 | 0.141 | search_minus_done; http://172.18.8.135:50400/match?q=GAATAAATATCCCCAGCTGC&k=0&no_gap=0&offset=0&limit=39
0.415 | 0.005 | cgi_end;

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