GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-17 07:52:50, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

TSA: Capsicum annuum MGMT_Contig3516, mRNA sequence.
JW053760.1:958-982
TCTGACTTTTCATATGCCTTGGCACCTTTG958GCAGCTTTAATTATGACGTAAGGTACTCTATCACCAATACCAGGTGCAGTAGCAG
TSA: Capsicum annuum EJ_MegaContig_10166, mRNA sequence.
JW130337.1:957-981
TCTGACTTTTCATATGCCTTGGCACCTTTG957GCAGCTTTAATTATGACGTAAGGTACTCTATCACCAATACCAGGTGCAGTAGCAG
Capsicum annuum Takanotsume DNA, chromosome 10, sequence.
AP026705.1:235212068-235212092
ATCAGTTGGACGATTACCTTGGCACCTTTG235212068GCAGCTTTAATTATGACGTAAGGTACTCTATCACCAATACCAGGTGCAGTAGCAG
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 10.
CP124722.1:239765894-239765918
ATCAGTTGGACGATTACCTTGGCACCTTTG239765894GCAGCTTTAATTATGACGTAAGGTACTCTATCACCAATACCAGGTGCAGTAGCAG
KS24063A02 KS24 Capsicum annuum cDNA, mRNA sequence.
GD123709.1:149-173
CTGCTACTGCACCTGGTATTGGTGATAGAG149TACCTTACGTCATAATTAAAGCTGCCAAAGGTGCCAAGGCATATGAAAAGTCAGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCAGCTTTAATTATGACGTAAGGTA
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGCTTTAATTATGACGTAAGGTA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.124 | 0.116 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGCTTTAATTATGACGTAAGGTA&k=0&no_gap=0&offset=0&limit=50
0.210 | 0.086 | search_minus_done; http://172.18.8.135:50400/match?q=TACCTTACGTCATAATTAAAGCTGC&k=0&no_gap=0&offset=0&limit=46
0.211 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).