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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-05 19:07:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CA00-XX-SH2-055-F08-EM.F Coffea arabica SH2 Coffea arabica cDNA clone CA00-XX-SH2-055-F08-EM, mRNA sequence.
GW446878.1:439-462
CACTCTCGAAGATGTATTTGAAGAGCTCTT439GCAGGAGGAAATTGTAGATGAGACAGATGAATTTGTTGATGTACACAAAAGAAT
Vitis vinifera contig VV78X247057.8, whole genome shotgun sequence.
AM484202.2:7257-7280
CCTGATAGTTTTTTATGTTCTCATCTCAAT7257GCAGGAGGAAATTGTAGATGAGACGGATGTATATGTTGATGTACATAAAAGGTA
Ipomoea trifida cultivar NCNSP0306 chromosome 7.
CP025650.1:18169448-18169471
CACATCTTTTATGACTTGTTTTTAACGAGT18169448GCAGGAGGAAATTGTAGATGAGACTGATGTATATATTGATGTGCACAAAAGGTA
Ipomoea triloba cultivar NCNSP0323 chromosome 7.
CP025666.1:24601099-24601122
CACATCTTTTATGACTTGTTTTTTACGAGT24601099GCAGGAGGAAATTGTAGATGAGACTGATGTATATATTGATGTACACAAAAGGTA
Vitis rotundifolia cultivar Noble chromosome 7.
CP092932.1:1779599-1779622
CCTGATAGTTTTTTATGTTCTCATCTCAAT1779599GCAGGAGGAAATTGTAGATGAGACAGATGTATATGTTGATGTACATAAAAGGTA
Quercus dentata isolate Qdleaves-2020 chromosome 12.
CP116455.1:22692214-22692237
TCTTTTTTTTTCACCCTCCCCTTCCTAACT22692214GCAGGAGGAAATTGTAGATGAGACAGATGTGTATGTTGATGTACATAAAAGGTA
Corylus americana cultivar Rush chromosome 2.
CP125815.1:11403225-11403248
GGAAACTTTTTTTTATTTATTTTTATTTTT11403225GCAGGAGGAAATTGTAGATGAGACAGATGTGTATATTGATGTACATAAAAGGTA
Corylus americana cultivar Winkler chromosome 2.
CP125826.1:10923016-10923039
GGAAACTTTTTTTTATTTATTTTTATTTTT10923016GCAGGAGGAAATTGTAGATGAGACAGATGTGTATATTGATGTACATAAAAGGTA
Vitis vinifera cultivar Pinot Noir 40024 chromosome 7.
CP126654.1:1937162-1937185
CCTGATAGTTTTTTATGTTCTCATCTCAAT1937162GCAGGAGGAAATTGTAGATGAGACGGATGTATATGTTGATGTACATAAAAGGTA
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128333.1:1916578-1916601
CCTGATAGTTTTTTATGTTCTCATCTCAAT1916578GCAGGAGGAAATTGTAGATGAGACGGATGTATATGTTGATGTACATAAAAGGTA
Vitis x doaniana cultivar PI 588149 chromosome 7.
CP128352.1:1962635-1962658
CCTGATAGTTTTTTATGTACTCATCTCAAT1962635GCAGGAGGAAATTGTAGATGAGACGGATGTATATGTTGATGTACATAAAAGGTA
Quercus variabilis isolate HB chromosome 12b.
CP129444.1:19737840-19737863
ATCTTTTTTTTCTCCCTCCCCTTCCTAACT19737840GCAGGAGGAAATTGTAGATGAGACAGATGTGTATGTTGATGTACATAAAAGGTA
Quercus variabilis isolate HB chromosome 12a.
CP129456.1:20156497-20156520
ATCTTTTTTTTCTCCCTCCCCTTCCTAACT20156497GCAGGAGGAAATTGTAGATGAGACAGATGTGTATGTTGATGTACATAAAAGGTA
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141912.1:34028751-34028774
ATGATGAATTTTCCTAATCCTCTTTTCAAT34028751GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGAAGGTA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141920.1:39168812-39168835
TATGACGATTTTCCTGATCCCCTTTTCAAC39168812GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus hybrid cultivar cultivar Flame chromosome 3.
CP141929.1:36351220-36351243
ATGATGAATTTTCCTAATCCTCTTTTCAAT36351220GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGAAGGTA
Malus hybrid cultivar cultivar Flame chromosome 11.
CP141937.1:39008838-39008861
TATGACGATTGTCCTGATCCCCTTTTCAAC39008838GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141963.1:39403762-39403785
TATGACGATTGTCCTGATCCCCTTTTCAAC39403762GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus hybrid cultivar cultivar Royalty chromosome 11.
CP141980.1:40766892-40766915
TATGACGATTGTCCTGATCCCCTTTTCAAC40766892GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143360.1:34657943-34657966
ATGATGAATTTTCCTAATCCTCTTTTCAAT34657943GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143368.1:39406305-39406328
TATGACGATTGTCCTGATCCCCTTTTCAAC39406305GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus hybrid cultivar cultivar SH6 chromosome 3.
CP143377.1:32333630-32333653
ATGATGAATTTTCCTAATCCTCTTTTCCAT32333630GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus hybrid cultivar cultivar SH6 chromosome 11.
CP143385.1:37130564-37130587
TATGACGATTGTCCTGATCCCCTTTTCAAC37130564GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Corylus avellana genome assembly, chromosome: ca2.
LR899424.1:12907515-12907538
GGAAACTTTTTTTTATTTATTTTTATTTTT12907515GCAGGAGGAAATTGTAGATGAGACAGATGTGTATATTGATGTACATAAAAGGTA
Malus sylvestris genome assembly, chromosome: 3.
OU696505.1:34428731-34428754
ATGATGAATTTTCCTAATCCTCTTTTCAAT34428731GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus sylvestris genome assembly, chromosome: 11.
OU696513.1:39150452-39150475
TATGACGATTGTCCTGATCCCCTTTTCAAC39150452GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus domestica genome assembly, chromosome: 3.
OU696679.1:35848890-35848913
ATGATGAATTTTCCTAATCCTCTTTTCAAT35848890GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGAAGGTA
Malus domestica genome assembly, chromosome: 11.
OU696687.1:39497208-39497231
TATGACGATTGTCCTGATCCCCTTTTCAAC39497208GCAGGAGGAAATTGTAGATGAGACAGATGTATATGTCGATGTACATAGGAGGTA
Malus domestica genome assembly, chromosome: 3.
OU744544.1:35545806-35545829
ATGATGAATTTTCCTAATCCTCTTTTCAAT35545806GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus domestica genome assembly, chromosome: 11.
OU744552.1:39432299-39432322
TATGACGATTGTCCTGATCCCCTTTTCAAC39432299GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus domestica genome assembly, chromosome: 3.
OU744955.1:34903150-34903173
ATGATGAATTTTCCTAATCCTCTTTTCAAT34903150GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus domestica genome assembly, chromosome: 11.
OU744963.1:38705088-38705111
TATGACGATTGTCCTGATCCCCTTTTCAAC38705088GCAGGAGGAAATTGTAGATGAGACAGATGTATATGTCGATGTACATAGGAGGTA
Malus domestica genome assembly, chromosome: 3.
OU744993.1:35607128-35607151
ATGATGAATTTTCCTAATCCTCTTTTCAAT35607128GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Malus domestica genome assembly, chromosome: 11.
OU745001.1:40205991-40206014
TATGACGATTGTCCTGATCCCCTTTTCAAC40205991GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Sambucus nigra genome assembly, chromosome: 11.
OX422217.1:534042029-534042052
GAATGGTTTTTAATTTTCCTGTACACTGTT534042029GCAGGAGGAAATTGTAGATGAGACGGATGTATATATTGATGTGCATAAGAGGTT
Malus x robusta genome assembly, chromosome: 6.
OY720330.1:34969421-34969444
ATGATGAATTTTCCTAATCCTCTTTTCAAT34969421GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGAAGGTA
Pyrus communis genome assembly, chromosome: 14.
OY757081.1:23607747-23607770
ATGATGAATTTTCCTAATCCTCTTTTCAAT23607747GCAGGAGGAAATTGTAGATGAGACAGATGTATATATCGATGTACATAGGAGGTA
Quercus cerris genome assembly, chromosome: 12.
OY770017.1:19854426-19854449
ATCTTTTTTTTCTCCCTCCCCTTCCTAACT19854426GCAGGAGGAAATTGTAGATGAGACAGATGTGTATGTTGATGTACATAAAAGGTA
Primula vulgaris genome assembly, chromosome: 11.
OY987222.1:15962742-15962765
TCATCGTTGACTACTCTGTTGTTGTTTTAT15962742GCAGGAGGAAATTGTAGATGAGACTGATGTGTATATTGATGTACATAAAAGGTG
Gnaphalium uliginosum genome assembly, chromosome: 2.
OZ005681.1:4457245-4457268
TCTAAGGACATGATTAATTTGTGGATCACT4457245GCAGGAGGAAATTGTAGATGAGACTGATGAATTTGTTGATGTGCATAAAAGGTA
Carpinus viminea chromosome 3.
CP054669.1:34104755-34104778
TACCTTTTATGTACATCAATATACACATCT34104755GTCTCATCTACAATTTCCTCCTGCATTCAGGAAGGGGATCAGAAAGAAAACAAA
Rhododendron vialii isolate Sample 1 chromosome 13b.
CP127064.1:2364575-2364598
TACCTTTTATGGACATCAACATATACATCT2364575GTCTCATCTACAATTTCCTCCTGCATTGATGGAACCCAAAATCATAAACTCAGG
Rhododendron vialii isolate Sample 1 chromosome 13a.
CP127077.1:2379788-2379811
TACCTTTTATGGACATCAACATATACATCT2379788GTCTCATCTACAATTTCCTCCTGCATTGATGGAACCCAAAATCATAAACTCAGG
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141955.1:2146051-2146074
TACCTCCTATGTACATCGATATATACATCT2146051GTCTCATCTACAATTTCCTCCTGCATTGAAAAGAGGATTAGGAAAATTCATCAT
Malus hybrid cultivar cultivar Royalty chromosome 3.
CP141972.1:2138607-2138630
TACCTCCTATGTACATCGATATATACATCT2138607GTCTCATCTACAATTTCCTCCTGCATTGAAAAGAGGATTAGGAAAATTCATCAT
Vitis vinifera cv. PN40024, annotated scaffold_104.assembly12x.
FN596005.1:1281498-1281521
TACCTTTTATGTACATCAACATATACATCC1281498GTCTCATCTACAATTTCCTCCTGCATTGAGATGAGAACATAAAAAACTATCAGG
Fagus sylvatica genome assembly, chromosome: 11.
OU015771.1:30513341-30513364
TACCTTTTATGTACATCAACATACACATCT30513341GTCTCATCTACAATTTCCTCCTGCATTTGGGAAGGGAATGTGGAAAAATAAATA
Quercus robur genome assembly, chromosome: 12.
OW028776.1:19931947-19931970
TACCTTTTATGTACATCAACATACACATCT19931947GTCTCATCTACAATTTCCTCCTGCAGTTAGGAAGGGGAGGGTGAAAAAAAAAAA
Ilex aquifolium genome assembly, chromosome: 4.
OX637394.1:2151667-2151690
TACCGTTTATGTACATCAACATATACATCA2151667GTCTCATCTACAATTTCCTCCTGCATCAGTGAATAGATCTATCAATAACCATTC
Alnus glutinosa genome assembly, chromosome: 12.
OY340909.1:6221237-6221260
TACCTTTTATGTACATCAATATACACATCT6221237GTCTCATCTACAATTTCCTCCTGCATTTGGGAAGGTGATCAGGAAAAAAAAATT
Malus x robusta genome assembly, chromosome: 5.
OY720329.1:2223849-2223872
TACCTCCTATGTACATCGATATATACATCT2223849GTCTCATCTACAATTTCCTCCTGCGTTGAAAAGGGGATCAGGAAAATCGTCATA
Crataegus laevigata genome assembly, chromosome: 6.
OY756943.1:2476264-2476287
TACCTCCTATGTACATCGATATATACATCT2476264GTCTCATCTACAATTTCCTCCTGCGTTGAAAAGGGGATCAGGAAAATCGTCATA
Crataegus laevigata genome assembly, chromosome: 9.
OY756946.1:2388905-2388928
TACCTCCTATGTACATCGATATACACATCT2388905GTCTCATCTACAATTTCCTCCTGCATTGAAAAGAGGATTAGGAAAATTCTTCAT
Pyrus communis genome assembly, chromosome: 8.
OY757075.1:1660689-1660712
TACCTCCTATGTACATCGATATATACATCT1660689GTCTCATCTACAATTTCCTCCTGCGTTGAAAAGGGGACCAGGAAAATCGTCATA
Primula veris genome assembly, chromosome: 9.
OY821748.1:21809582-21809605
CACCTTTTATGTACATCAATATACACATCA21809582GTCTCATCTACAATTTCCTCCTGCATAAAACAACAACAGAGTAGTCAACGATGA
Viola odorata genome assembly, chromosome: 9.
OY829545.1:5221613-5221636
TACCTTTTATGTACATCAATGTATACATCT5221613GTCTCATCTACAATTTCCTCCTGCATTGAGGGAAGAAAAGATGAGATTATATGG
Vaccinium vitis-idaea genome assembly, chromosome: 2.
OY978216.1:2775112-2775135
TACCTTTTATGGACATCAACATATACATCT2775112GTCTCATCTACAATTTCCTCCTGCATTGATGAAAGCCAAAATCATAAAACTCTG

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAGGAGGAAATTGTAGATGAGAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGGAGGAAATTGTAGATGAGAC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.495 | 0.487 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGGAGGAAATTGTAGATGAGAC&k=0&no_gap=0&offset=0&limit=50
0.649 | 0.153 | search_minus_done; http://172.18.8.135:50400/match?q=GTCTCATCTACAATTTCCTCCTGC&k=0&no_gap=0&offset=0&limit=10
0.659 | 0.011 | cgi_end;

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