GGGenome Help | English

データベース:

ミスマッチ/ギャップを許容 ミスマッチのみ許容 : 塩基まで (検索する配列長の25%まで)
双方向を検索 +方向のみ検索 -方向のみ検索

2025-04-12 16:52:45, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます(ミスマッチ挿入欠失

Pinctada fucata DNA, chromosome 5, nearly complete sequence, Alternate Pseudohaplotype.
AP027120.1:2397891-2397910
CGATTATCTGAGGACGACTGATTAACCACG2397891GCAGGTCACCTTTACCATACACACAGACATATCTTACCATCTTACCATGG
Schistosoma rodhaini genome assembly, chromosome: 1.
OX103911.1:59039029-59039048
TAAATGGTTTTGTAAGTCTTCGATATTAAT59039029GCAGGTCACCTTTACCATACTGGACACACCCTAACTGGAGACGCTAAGTC
Brassica napus cultivar Xiang5A chromosome 3.
CP123878.1:1135241-1135260
GTAATCGATGATATTAGGAGAAGGTAAATA1135241GTATGGTAAAGGTGACCTGCAACGATTGAATATGAAGGTGGTGAGGATTT
Brassica napus genome assembly, chromosome: A03.
HG994357.1:1136520-1136539
GTAATCGATGATATTAGGAGAAGGTAAATA1136520GTATGGTAAAGGTGACCTGCAACGATTGAATATGAAGGTGGTGAGGATTT
Brassica rapa genome, scaffold: A03.
LR031572.1:1147630-1147649
GTAATCGATGATATTAGGAGAAGGTAAATA1147630GTATGGTAAAGGTGACCTGCAACGATTGAATATGAAGGTGGTGAGGATTT
Brassica rapa genome assembly, chromosome: A03.
LS974619.2:1148498-1148517
GTAATCGATGATATTAGGAGAAGGTAAATA1148498GTATGGTAAAGGTGACCTGCAACGATTGAATATGAAGGTGGTGAGGATTT
Schistosoma mansoni strain Puerto Rico genome assembly, chromosome: 1.
HE601624.3:60343683-60343702
GACTTAGCGTCTCCAGTTAGGGTGTGTCCA60343683GTATGGTAAAGGTGACCTGCATTAATATCGAAGACTTACAAAACCATTTA
Schistosoma rodhaini genome assembly, chromosome: 1.
OX103911.1:59041493-59041512
GACTTAGCGTCTCCAGTTAGGGTGTGTCCA59041493GTATGGTAAAGGTGACCTGCATTAATATCGAAGACTTACAAAACCATTTA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAGGTCACCTTTACCATAC
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGGTCACCTTTACCATAC | format : html | download : | debug :

0.009 | 0.009 | search_start;
0.180 | 0.171 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGGTCACCTTTACCATAC&k=0&no_gap=0&offset=0&limit=50
0.291 | 0.111 | search_minus_done; http://172.18.8.135:50400/match?q=GTATGGTAAAGGTGACCTGC&k=0&no_gap=0&offset=0&limit=48
0.295 | 0.004 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).