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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:12:43, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

TSA: Raphanus sativus var. sativus RNA, contig: WG3_28468.
FX689227.1:143-163
TATGAAGATATGGCTTCAACAAGATGAGGA143GCAGTCTTAGCGAGAATATCACGCGTAAAACACAAAACAAGTTCACAAAGT
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_18450.
FX714413.1:218-238
TATGAAGATATGGCTTCAACAAGATGAGGA218GCAGTCTTAGCGAGAATATCACGCGTATAACACAAAACAAGTTCGCAAAGT
TSA: Chorispora bungeana T_18104 mRNA sequence.
KA054934.1:315-335
TATGAAGATATGGCTTCAACCAGGTGAGGG315GCAGTCTTAGCGAGAATATCACGCGTGAGACATAAAACAAGTTCACAAAGT
Brassica napus cultivar Xiang5A chromosome 5.
CP123880.1:2179148-2179168
TATGAAGATATGGCTTCAACAAGATGAGGA2179148GCAGTCTTAGCGAGAATATCACGCCTACAGCACATTTTGCAGATCTTAAAA
Brassica napus cultivar Xiang5A chromosome 16.
CP123891.1:3352432-3352452
TATGAAGATATGGCTTCAACAAGATGAGGA3352432GCAGTCTTAGCGAGAATATCACGCCTACAGCATATTTTGCAGATCTTAAAC
Raphanus sativus genome assembly, chromosome: 8.
LR778317.1:27907795-27907815
TATGAAGATATGGCTTCAACAAGATGAGGA27907795GCAGTCTTAGCGAGAATATCACGCCTACAGCATATTTTGCAGATCTTCAAC
EST2942 3-9 DAP Brassica Napus seed cDNA library Brassica napus cDNA clone B124F031, mRNA sequence.
EL625436.1:351-371
ACTTTGCGAACTTGTTTTGTGTTATACGCG351TGATATTCTCGCTAAGACTGCTCCTCATCTTGTTGAAGCCATATCTTCATA
TSA: Chorispora bungeana CK_24084 mRNA sequence.
KA012151.1:200-220
ACTTTGTGAACTTGTTTTATGTCTCACGCG200TGATATTCTCGCTAAGACTGCCCCTCCCCTGGTGGAAGCCATATCTTCATA
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrB038E05, complete sequence.
AC189332.2:99097-99117
TTTTAAGATCTGCAAAATGTGCTGTAGGCG99097TGATATTCTCGCTAAGACTGCTCCTCATCTTGTTGAAGCCATATCTTCATA
Brassica napus genome assembly, chromosome: C09.
HG994373.1:62123438-62123458
GTTTAAGATCTGCAAAATATGCTGTAGGCG62123438TGATATTCTCGCTAAGACTGCTCCTCATCTTGTTGAAGCCATATCTTCATA
Brassica rapa genome, scaffold: A10.
LR031577.1:15517335-15517355
TTTTAAGATCTGCAAAATATGCTGTAGGCG15517335TGATATTCTCGCTAAGACTGCTCCTCATCTTGTTGAAGCCATATCTTCATA
Brassica oleracea HDEM genome, scaffold: C9.
LR031875.1:60131234-60131254
GTTTAAGATCTGCAAAATATGCTGTAGGCG60131234TGATATTCTCGCTAAGACTGCTCCTCATCTTGTTGAAGCTATATCTTCATA
Brassica rapa genome assembly, chromosome: A10.
LS974626.2:18250915-18250935
TTTTAAGATCTGCAAAATATGCTGTAGGCG18250915TGATATTCTCGCTAAGACTGCTCCTCATCTTGTTGAAGCCATATCTTCATA
Raphanus sativus genome assembly, chromosome: 7.
OY743213.1:5071586-5071606
GTTGAAGATCTGCAAAATATGCTGTAGGCG5071586TGATATTCTCGCTAAGACTGCTCCTCATCTTGTTGAAGCCATATCTTCATA

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCAGTCTTAGCGAGAATATCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCAGTCTTAGCGAGAATATCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.201 | 0.193 | search_plus_done; http://172.18.8.135:50400/match?q=GCAGTCTTAGCGAGAATATCA&k=0&no_gap=0&offset=0&limit=50
0.382 | 0.181 | search_minus_done; http://172.18.8.135:50400/match?q=TGATATTCTCGCTAAGACTGC&k=0&no_gap=0&offset=0&limit=44
0.388 | 0.005 | cgi_end;

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