GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 14:53:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Pelobates cultripes genome assembly, chromosome: 08.
OW240919.1:47902080-47902099
CTATCTTTAACCTTTTAGTGTTACCATAAT47902080GCATATGACGAAGAGCATGCAATCACAGTCTCTACATCAAACAGAAATAA
TSA: Brassica rapa subsp. pekinensis RNA, contig: CF3_14392.
FX719951.1:923-942
TCCCGCTCAGGTCAAGAGATTCCAAGCCAG923GCATATGACGAAGAGCATGCGAAAGATTCTCTTAAGTTGAGCTTGCACAG
KBrH001J06F KBrH, Brassica rapa HindIII BAC library Brassica rapa subsp. pekinensis genomic clone KBrH001J06, genomic survey sequence.
CW979066.1:142-161
TCCCGCTCAGGTCAAGAGATTCCAAGCCAG142GCATATGACGAAGAGCATGCGAAAGATTCTCTGCATCGTATTTGTTGAGT
Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH001J06, complete sequence.
AC189534.2:141-160
TCCCGCTCAGGTCAAGAGATTCCAAGCCAG141GCATATGACGAAGAGCATGCGAAAGATTCTCTGCATCGTATTTGTTGAGT
Brassica napus cultivar Xiang5A chromosome 8.
CP123883.1:36011377-36011396
TCCCGCTCAGGTCAAGAGATTCCAAGCCAG36011377GCATATGACGAAGAGCATGCGAAAGATTCTCTGCATCGTATTTGTTGAGT
Brassica rapa subsp. pekinensis clone KBrH045L01, complete sequence.
FP090263.1:78654-78673
ACTCAACAAATACGATGCAGAGAATCTTTC78654GCATGCTCTTCGTCATATGCCTGGCTTGGAATCTCTTGACCTGAGCGGGA
Brassica napus genome assembly, chromosome: A07.
HG994361.1:351305-351324
ACTCAACAAATACGATGCAGAGAATCTTTC351305GCATGCTCTTCGTCATATGCCTGGCTTGGAATCTCTTGACCTGAGCGGGA
Brassica rapa genome, scaffold: A07.
LR031574.1:397472-397491
ACTCAACAAATACGATGCAGAGAATCTTTC397472GCATGCTCTTCGTCATATGCCTGGCTTGGAATCTCTTGACCTGAGCGGGA
Brassica rapa genome assembly, chromosome: A07.
LS974623.2:399376-399395
ACTCAACAAATACGATGCAGAGAATCTTTC399376GCATGCTCTTCGTCATATGCCTGGCTTGGAATCTCTTGACCTGAGCGGGA

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCATATGACGAAGAGCATGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATATGACGAAGAGCATGC | format : html | download : | debug : 

0.008 | 0.008 | search_start;
0.139 | 0.131 | search_plus_done; http://172.18.8.135:50400/match?q=GCATATGACGAAGAGCATGC&k=0&no_gap=0&offset=0&limit=50
0.178 | 0.038 | search_minus_done; http://172.18.8.135:50400/match?q=GCATGCTCTTCGTCATATGC&k=0&no_gap=0&offset=0&limit=45
0.180 | 0.003 | cgi_end;

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