GGGenome | Results

Matches are highlighted with blue background. Mismatches and in~~dels~~ are marked in red.

69091.1 Mixed Floral Solanum tuberosum cDNA clone 69091 5', mRNA sequence.
CV502682.1:182-201

GCTGCTACTGATACTTCAGAAGTTGCCAAG182GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT

TSA: Ipomoea batatas Contig_7523.Ipbalsr mRNA sequence.
JP112111.1:706-725

AGCACTACTGATACTTCTGAAGTTGCTAAG706GCATATGGTGGAGGTGGTTCTCCAAGTTCAAGCTCATTCATAATTCGGAT

CHO_OF3874xg02r1.ab1 CHO_OF3 Nicotiana tabacum genomic 3', genomic survey sequence.
FH146620.1:242-261

CCACAAATGTTTTGCTTCTTTAACATGCAG242GCATATGGTGGAGGTGGTTCTCCTAGTTCCAGCTCATTTATAATTCGGAT

Solanum lycopersicum DNA, clone: MTBAC069L03_SP6.
FT269081.1:395-414

GACAAAGACTTTGCTTCTTTAAACATGCAG395GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT

Solanum lycopersicum cDNA, clone: LEFL3144E12, HTC in root.
AK329445.1:1103-1122

GCTGCTACTGATACTTCAGAAGTTGCCAAG1103GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT

Eustoma grandiflorum DNA, chromosome 4, draft genome sequence.
AP025043.1:37221368-37221387

TTGGATCTATGACAAACCACCAACATGTAG37221368GCATATGGTGGAGGTGGTTCACCAAGTTCTAGTTCTTTCATCATTCGGAT

Solanum lycopersicum Micro-Tom DNA, chromosome 1, draft genome sequence.
AP028935.1:90173035-90173054

GACAAAGACTTTGCTTCTTTAAACATGCAG90173035GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT

Solanum lycopersicum cultivar I-3 chromosome 1.
CP023757.1:94150135-94150154

GACAAAGACTTTGCTTCTTTAAACATGCAG94150135GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT

Solanum tuberosum cultivar P8 chromosome 1.
CP046688.1:82822598-82822617

AACRAATACTTTGCTTCTTTAAACATGCAG82822598GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT

Solanum tuberosum cultivar MSH/14-112 chromosome 1.
CP046702.1:82823363-82823382

AACRAATACTTTGCTTCTTTAAACATGCAG82823363GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT

Solanum pinnatisectum cultivar CGN17745 chromosome 1.
CP047567.1:82795184-82795203

AACGAATACTTTGCTTCTTTAAACATGCAG82795184GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT

Solanum tuberosum cultivar Solyntus chromosome 1.
CP055234.1:53965928-53965947

AACAAATACTTTGCTTCTTTAAACATGCAG53965928GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT

Vitis x doaniana cultivar PI 588149 chromosome 3.
CP128329.1:10211142-10211161

AGCAAGTTTTCTTTGCACATAAATGTGAAG10211142GCATATGGTGGAGGTGGTTCCCCAAGTTCTAGCTCCTTTATAATAAGGAT

Solanum verrucosum cultivar 11H23 chromosome 1.
CP133612.1:79027629-79027648

AACAAATACTTTGCTTCTTTAAACATGCAG79027629GCATATGGTGGAGGTGGTTCTCCTAGTTCTAGCTCATTTATAATTCGGAT

Solanum pennellii chromosome ch01, complete genome.
HG975440.1:104797936-104797955

GACAAAGACTTTGCTTCTTTAAACATGCAG104797936GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT

Solanum lycopersicum chromosome ch01, complete genome.
HG975513.1:85910612-85910631

GACAAAGACTTTGCTTCTTTAAACATGCAG85910612GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT

Solanum lycopersicum genome assembly, chromosome: 1.
OU640344.1:91979097-91979116

GACAAAGACTTTGCTTCTTTAAACATGCAG91979097GCATATGGTGGAGGTGGTTCTCCTTGTTCTAGCTCATTTATAATTCGGAT

Misopates orontium genome assembly, chromosome: 4.
OX326949.1:36776955-36776974

TTTTAGGTGCGTATATTTTTTAACCTGTAG36776955GCATATGGTGGAGGTGGTTCCGCAAGTTCCAGCTCCTTTATCATTCGTAT

Hedera helix genome assembly, chromosome: 24.
OX359287.1:30786224-30786243

TTTTCTATCTTTCCATCTTTAATCATGAAG30786224GCATATGGTGGAGGTGGTTCCCCCTGTTCCAGCTCCTTCATAATTCGAAT

Linaria vulgaris genome assembly, chromosome: 6.
OX415254.1:75791876-75791895

TTTAGAGTAAATGTATATTTGAACCTGCAG75791876GCATATGGTGGAGGTGGTTCCCCTGGTTCCAGCTCCTTTATCATTCGTAT

Ilex aquifolium genome assembly, chromosome: 5.
OX637395.1:38302931-38302950

TCAGTTTACTTAGCATGTGGAAACATGAAG38302931GCATATGGTGGAGGTGGTTCCCCATGTTATAGCTCCTTTATAATAAGGAT

Verbascum thapsus genome assembly, chromosome: 1.
OY770104.1:1893778-1893797

AAATTTATTTTTGGGTATTAAAACCTGTAG1893778GCATATGGTGGAGGTGGTTCCCCAAGTTCCAGTTCATTTATCATTCGCAT

Geranium rotundifolium genome assembly, chromosome: 13.
OY987323.1:2991804-2991823

GCAAGTTTCGTTACATCTCTAAACATGAAG2991804GCATATGGTGGAGGTGGTTCGCCAGGCTCTAGCTCTTTTATAATAAGGAT

Erodium maritimum genome assembly, chromosome: 9.
OY997596.1:62521875-62521894

GCAAGTTTCTTTGCATCTCCAATCATGAAG62521875GCATATGGTGGAGGTGGTTCACCAGGTTCTAGCTCCTTCATTATAAGGAT

CHO_OF235xb21f1.ab1 CHO_OF Nicotiana tabacum genomic 5', genomic survey sequence.
ET928166.1:343-362

ATCCGAATTATAAATGAGCTGGAACTAGGA343GAACCACCTCCACCATATGCCTGCATGTTAAAGAAGCAAAACATTTGTGG

Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-156i17 map 1, complete sequence.
AC239238.8:38371-38390

ATCCGAATTATAAATGAGCTAGAACAAGGA38371GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAAGTCTTTGTC

Solanum lycopersicum strain Heinz 1706 chromosome 1 clone hba-100k15 map 1, complete sequence.
AC240855.7:66918-66937

ATCCGAATTATAAATGAGCTAGAACAAGGA66918GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAAGTCTTTGTC

Ipomoea trifida cultivar NCNSP0306 chromosome 9.
CP025652.1:1373476-1373495

ATCCGAATTATGAATGAGCTTGAACTTGGA1373476GAACCACCTCCACCATATGCCTTAATGTTTGAAGAGAAATGAAAATCCGT

Ipomoea triloba cultivar NCNSP0323 chromosome 9.
CP025668.1:1820720-1820739

ATCCGAATTATGAATGAGCTTGAACTTGGA1820720GAACCACCTCCACCATATGCCTTAATGTTTGAAGAGAAATGAAAATCCAT

Capsicum rhomboideum cultivar Andean isolate CrT2T chromosome 1.
CP124719.1:140154689-140154708

ATGCGAATTATAAATGAGCTAGAACTAGGA140154689GAACCACCTCCACCATATGCCTGCATGGTTAAAGAAGCAAAGTATCTGTT

Vitis x doaniana cultivar PI 588149 chromosome 3.
CP128348.1:9899252-9899271

ATCCTTATTATAAAGGAGCTAGAACTTGGG9899252GAACCACCTCCACCATATGCCTTCACATTTATGTGCAAAGAAAACTTGCT

Solanum dulcamara genome assembly, chromosome: 4.
OX359255.1:5199374-5199393

ATCCGAATTATAAATGAGCTAGAACTAGGA5199374GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAATTATTTGTT

Solanum dulcamara genome assembly, chromosome: 4.
OX359255.1:5213747-5213766

ATCCGAATTATAAATGAGCTAGAACTAGGA5213747GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAATTATTTGTT

Solanum dulcamara genome assembly, chromosome: 4.
OX359255.1:5228215-5228234

ATCCGAATTATAAATGAGCTAGAACTAGGA5228215GAACCACCTCCACCATATGCCTGCATGTTTAAAGAAGCAAATTATTTGTT

Primula veris genome assembly, chromosome: 4.
OY821743.1:2438652-2438671

ATCCTAATAATAAAGGAGCTCGAACTCGGT2438652GAACCACCTCCACCATATGCCTTTATATAAAAAAAGGGATGTAGAATGTA

Primula vulgaris genome assembly, chromosome: 5.
OY987216.1:1948097-1948116

ATCCTAATAATAAAGGAGCTCGAACTCGGT1948097GAACCACCTCCACCATATGCCTTTATATAAAATAAGGGATGTAGAATGTA

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Debug Info:

0.009 | 0.009 | search_start;
0.223 | 0.214 | search_plus_done; http://172.18.8.135:50400/match?q=GCATATGGTGGAGGTGGTTC&k=0&no_gap=0&offset=0&limit=50
0.301 | 0.078 | search_minus_done; http://172.18.8.135:50400/match?q=GAACCACCTCCACCATATGC&k=0&no_gap=0&offset=0&limit=26
0.309 | 0.008 | cgi_end;

Summary:

Results:

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