GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:09:13, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

Solanum tuberosum EST, clone S3b7.
AJ489153.1:204-223
AGATAAGATCCATGGAGAAGAAAGTGGAGA204GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
EST516062 cSTD Solanum tuberosum cDNA clone cSTD17H15 5' sequence, mRNA sequence.
BG890211.1:185-204
AGATAAGATCCATGGAGAAGAAAGTGGAGA185GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
EST538609 P. infestans-challenged potato leaf, compatible reaction Solanum tuberosum cDNA clone PPCCL10 5' sequence, mRNA sequence.
BI435848.1:136-155
AGATAAGATCCATGGAGAAGAAAGTGGAGA136GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
EST556171 potato roots Solanum tuberosum cDNA clone cPRO1H16 5' end, mRNA sequence.
BM108635.1:202-221
AGATAAGATCCATGGAGAAGAAAGTGGAGA202GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAGGAGAA
EST557449 potato roots Solanum tuberosum cDNA clone cPRO5N21 5' end, mRNA sequence.
BM109913.1:215-234
AGATAAGATCCATGGAGAAGAAAGTGGAGA215GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
EST579602 potato roots Solanum tuberosum cDNA clone cPRO23K18 5' end, mRNA sequence.
BM405275.1:185-204
AGATAAGATCCATGGAGAAGAAAGTGGAGA185GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
EST581264 potato roots Solanum tuberosum cDNA clone cPRO29E20 5' end, mRNA sequence.
BM406937.1:202-221
AGATAAGATCCATGGAGAAGAAAGTGGAGA202GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
EST581746 potato roots Solanum tuberosum cDNA clone cPRO30J14 5' end, mRNA sequence.
BM407419.1:207-226
AGATAAGATCCATGGAGAAGAAAGTGGAGA207GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
EST581956 potato roots Solanum tuberosum cDNA clone cPRO31D6 5' end, mRNA sequence.
BM407629.1:214-233
AGATAAGATCCATGGAGAAGAAAGTGGAGA214GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
EST582168 potato roots Solanum tuberosum cDNA clone cPRO32M20 5' end, mRNA sequence.
BM407841.1:197-216
AGATAAGATCCATGGAGAAGAAAGTGGAGA197GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
12390 Stolon Solanum tuberosum cDNA, mRNA sequence.
CK852054.1:217-236
AGATAAGATCCATGGAGAAGAAAGTGGAGA217GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
27780 Suspension culture Solanum tuberosum cDNA, mRNA sequence.
CN214121.1:209-228
AGATAAGATCCATGGAGAAGAAAGTGGAGA209GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
4630.1 Tuber Skin Solanum tuberosum cDNA clone 4630 5', mRNA sequence.
CN516335.1:214-233
AGATAAGATCCATGGAGAAGAAAGTGGAGA214GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
52122.1 After-Cooking Darkening C Solanum tuberosum cDNA clone 52122 5', mRNA sequence.
CV429475.1:164-183
AGATAAGATCCATGGAGAAGAAAGTGGAGA164GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
39097.1 Cold Sweetening B Solanum tuberosum cDNA clone 39097 5', mRNA sequence.
CV494370.1:198-217
AGATAAGATCCATGGAGAAGAAAGTGGAGA198GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
11265.2 Stolon Solanum tuberosum cDNA clone 11265 5', mRNA sequence.
DN848870.1:214-233
AGATAAGATCCATGGAGAAGAAAGTGGAGA214GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
SDBT002I17x SDBT Solanum tuberosum cDNA clone SDBT002I17, mRNA sequence.
EG013127.1:234-253
AGATAAGATCCATGGAGAAGAAAGTGGAGA234GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
Solanum melongena mRNA, clone: CPA02N05, 5'end, expressed in ovary at 24h after anthesis.
FS015803.1:209-228
AGATAAGATCCATGGAGAAGATAGTGGAGA209GCATCACAAGGATGGAAAGGAGAAGAAGGAGAAGAAGAAGAAGAAAGACA
Solanum melongena mRNA, clone: PER07J09, 5'end, expressed in pericarp at 10d after anthesis.
FS041600.1:200-219
AGATAAGATCCATGGAGAAGATAGTGGAGA200GCATCACAAGGATGGAAAGGATAAGAAGGAGAAGAAGAAGAAGAAAGACA
Solanum melongena mRNA, clone: PER07P16, 5'end, expressed in pericarp at 10d after anthesis.
FS041869.1:293-312
AGATAAGATCCATGGAGAAGATAGTGGAGA293GCATCACAAGGATGGAAAGGATAAGAAGGAGAAGAAGAAGAAGAAAGACA
Solanum melongena mRNA, clone: PLA04L15, 5'end, expressed in mixture of placenta and immature seed at 10d after anthesis.
FS045005.1:53-72
AGATAAGATCCATGGAGAAGATAGTGGAGA53GCATCACAAGGATGGAAAGGATAAGAAGGAGAAGAAGAAGAAGAAAGACA
Solanum melongena mRNA, clone: PST03H08, 5'end, expressed in mixture of petal and stamen at anthesis.
FS049300.1:209-228
AGATAAGATCCATGGAGAAGATAGTGGAGA209GCATCACAAGGATGGAAAGGATAAGAAGGAGAAGAAGAAGAAGAAAGAC
Solanum melongena mRNA, clone: RBW05A17, 5'end, expressed in root at 3w after germination.
FS051562.1:209-228
AGATAAGATCCATAGAGAAGATAGTGGAGA209GCATCACAAGGATGGAAAGGAGAAGAAGGAGAAGAAGAAGAAGAAAGACA
Solanum melongena mRNA, clone: RBW07I06, 5'end, expressed in root at 3w after germination.
FS052868.1:167-186
AGATAAGATCCATGGAGAAGATAGTGGAGA167GCATCACAAGGATGGAAAGGAGAAGAAGGAGAAGAAGAAGAAGAAAGACA
Solanum melongena mRNA, clone: SEP07B19, 5'end, expressed in sepal at 10d after anthesis.
FS062034.1:201-220
AGATAAGATCCATGGAGAAGATAGTGGAGA201GCATCACAAGGATGGAAAGGATAAGAAGGAGAAGAAGAAGAAGAAAGACA
SRN_T3_159_G03_10JUN2005_019.1 SRN (roots from Solanum tuberosum Shepody fertilized with nitrogen) Solanum tuberosum cDNA clone SRN_T3_159_G03_10JUN2005_019 5', mRNA sequence.
JG565929.1:206-225
AGATAAGATCCATGGAGAAGAAAGTGGAGA206GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
C_T3_063_C03_08MAR2005_027.1 LIPTC Solanum tuberosum cDNA clone C_T3_063_C03_08MAR2005_027, mRNA sequence.
JG728450.1:137-156
AGATAAGATCCATGGAGAAGAAAGTGGAGA137GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
C_T3_074_H02_14MAR2005_002.1 LIPTC Solanum tuberosum cDNA clone C_T3_074_H02_14MAR2005_002, mRNA sequence.
JG728533.1:215-234
AGATAAGATCCATGGAGAAGAAAGTGGAGA215GCATCACAAGGATGGAAAGGAGAAGAAGAAGAAGAAAGACAAAAAGGAGA
Sm30PPL05H12 Library from 30 dpa fruit of eggplant cv. PPL Solanum melongena cDNA, mRNA sequence.
JZ717265.1:96-115
AGATAAGATCCATGGAGAAGATAGTGGAGA96GCATCACAAGGATGGAAAGGAGAAGAAGGAGAAGAAGAAGAAGAAAGACA
Echiichthys vipera genome assembly, chromosome: 13.
OY829658.1:13603456-13603475
CACCGTGTACCTGGTCTTACCAAGAGCGCA13603456CCTTTCCATCCTTGTGATGCTGAGGTCTGACTGGAGAAACAGATGGAGTC
33202 In vitro Root Solanum tuberosum cDNA, mRNA sequence.
CK862067.1:199-218
TCTCCTTTTTGTCTTTCTTCTTCTTCTTCT199CCTTTCCATCCTTGTGATGCTCTCCACTTTCTTCTCCATGGATCTTATCT
59932.1 In vitro Root Solanum tuberosum cDNA clone 59932 5', mRNA sequence.
CO502659.1:208-227
TCTCCTTTTTGTCTTTCTTCTTCTTCTTCT208CCTTTCCATCCTTGTGATGCTCTCCACTTTCTTCTCCATGGATCTTATCT
60330.1 Low Molecular Weight Solanum tuberosum cDNA clone 60330 5', mRNA sequence.
CV651251.1:157-176
TCTCCTTTTTGTCTTTCTTCTTCTTCTTCT157CCTTTCCATCCTTGTGATGCTCTCCACTTTCTTCTCCATGGATCTTATCT
51215.1 Late Blight-Challenged Tubers Solanum tuberosum cDNA clone 51215 5', mRNA sequence.
DN589863.1:333-352
TCTCCTTTTTGTCTTTCTTCTTCTTCTTCT333CCTTTCCATCCTTGTGATGCTCTCCACTTTCTTCTCCATGGATCTTATCT
11265.3 Stolon Solanum tuberosum cDNA clone 11265 3', mRNA sequence.
DN848871.1:332-351
TCTCCTTTTGGTCTTTCTTCTTCTTCTTCT332CCTTTCCATCCTTGTGATGCTCTCCACTTTCTTCTCCATGGATCTTATCT
94204.1 Cold Sweetening C Solanum tuberosum cDNA clone 94204 5', mRNA sequence.
DV624633.1:150-169
TCTCCTTTTTGTCTTTCTTCTTCTTCTTCT150CCTTTCCATCCTTGTGATGCTCTCCACTTTCTTCTCCATGGATCTTATCT
Solanum melongena mRNA, clone: CPA02G02, 3'end, expressed in ovary at 24h after anthesis.
FS015555.1:291-310
TGTCTTTCTTCTTCTTCTTCTCCTTCTTCT291CCTTTCCATCCTTGTGATGCTCTCCACTATCTTCTCCATGGATCTTATCT
Solanum melongena mRNA, clone: CPA02N05, 3'end, expressed in ovary at 24h after anthesis.
FS015804.1:296-315
TGTCTTTCTTCTTCTTCTTCTCCTTCTTCT296CCTTTCCATCCTTGTGATGCTCTCCACTATCTTCTCCATGGATCTTATCT
Solanum melongena mRNA, clone: PER07J09, 3'end, expressed in pericarp at 10d after anthesis.
FS041601.1:280-299
TGTCTTTCTTCTTCTTCTTCTCCTTCTTAT280CCTTTCCATCCTTGTGATGCTCTCCACTATCTTCTCCATGGATCTTATCT
Solanum melongena mRNA, clone: PER07P16, 3'end, expressed in pericarp at 10d after anthesis.
FS041870.1:280-299
TGTCTTTCTTCTTCTTCTTCTCCTTCTTAT280CCTTTCCATCCTTGTGATGCTCTCCACTATCTTCTCCATGGATCTTATCT
Solanum melongena mRNA, clone: PST03H08, 3'end, expressed in mixture of petal and stamen at anthesis.
FS049301.1:30-49
GTCTTTCTTCTTCTTCTTCTCCTTCTTAT30CCTTTCCATCCTTGTGATGCTCTCCACTATCTTCTCCATGGATCTTATCT
Solanum melongena mRNA, clone: RBW05A17, 3'end, expressed in root at 3w after germination.
FS051563.1:281-300
TGTCTTTCTTCTTCTTCTTCTCCTTCTTCT281CCTTTCCATCCTTGTGATGCTCTCCACTATCTTCTCTATGGATCTTATCT
Solanum melongena mRNA, clone: SEP07B19, 3'end, expressed in sepal at 10d after anthesis.
FS062035.1:119-138
TGTCTTTCTTCTTCTTCTTCTCCTTCTTAT119CCTTTCCATCCTTGTGATGCTCTCCACTATCTTCTCCATGGATCTTATCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCATCACAAGGATGGAAAGG
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATCACAAGGATGGAAAGG | format : html | download : | debug : 

0.008 | 0.008 | search_start;
1.509 | 1.500 | search_plus_done; http://172.18.8.135:50400/match?q=GCATCACAAGGATGGAAAGG&k=0&no_gap=0&offset=0&limit=50
2.405 | 0.896 | search_minus_done; http://172.18.8.135:50400/match?q=CCTTTCCATCCTTGTGATGC&k=0&no_gap=0&offset=0&limit=21
2.415 | 0.009 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).