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ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 15:59:44, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CHO_OF6880xf11r1.ab1 CHO_OF6 Nicotiana tabacum genomic 3', genomic survey sequence.
FH995378.1:329-354
AGGAAATAAATCTTGCCACGTTGAAGTTCA329GCATCAGGAGGAACTACAACGATCTTGGGACAAATTACCCCTTCTTCTGAGGAATA
Manihot esculenta mRNA, clone: CAS01_013_C04, 5'end.
DB924415.1:399-424
TCGTCTCCTTGCGATGATGGGGTGGTTCCA399AAGATCGTTGTAGTTCCTCCTGATGCAGAGCTTCAACGTGGAAAGATCTATTTTCT
Manihot esculenta mRNA, clone: CAS01_014_C09, 5'end.
DB924790.1:315-340
TCGTCTCCTTGCGATGATGGGGTGGTTCCA315AAGATCGTTGTAGTTCCTCCTGATGCAGAGCTTCAACGTGGAAAGATCTATTTTCT
U_SX-090909_plate73p12.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG972753.1:326-351
TCGTCTCCTTGCGATGATGGGGTGGTTCCA326AAGATCGTTGTAGTTCCTCCTGATGCAGAGCTTCAACGTGGAAAGATCTATTTTCT
U_SX-090916_plate68o10.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG975202.1:326-351
TCGTCTCCTTGCGATGATGGGGTGGTTCCG326AAGATCGTTGTAGTTCCTCCTGATGCAGAGCTTCGACGTGGAAAGATCTATTTTCT
U_SX-090916_plate70n18.b1 Full-length enriched cDNA library of cassava MECU72 Manihot esculenta cDNA, mRNA sequence.
JG975466.1:254-279
TCGTCTCCTTGCGATGATGGGGTGGTTCCA254AAGATCGTTGTAGTTCCTCCTGATGCAGAGCTTCAACGTGGAAAGATCTATTTTCT
CHO_OF183xn06r1.ab1 CHO_OF Nicotiana tabacum genomic 3', genomic survey sequence.
ET863692.1:609-634
TTATTCCTCAGAAGAAGGGTAATTTGTCCC609AAGATCGTTGTAGTTCCTCCTGATGCTGAACTTCAACGTGGCAAGATTTATTTCCT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCATCAGGAGGAACTACAACGATCTT
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATCAGGAGGAACTACAACGATCTT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.186 | 0.178 | search_plus_done; http://172.18.8.135:50400/match?q=GCATCAGGAGGAACTACAACGATCTT&k=0&no_gap=0&offset=0&limit=50
0.725 | 0.539 | search_minus_done; http://172.18.8.135:50400/match?q=AAGATCGTTGTAGTTCCTCCTGATGC&k=0&no_gap=0&offset=0&limit=49
0.729 | 0.004 | cgi_end;

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