GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-05 05:16:48, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Solanum tuberosum cultivar RH89-039-16 chromosome 5 clone RH024J06, *** SEQUENCING IN PROGRESS ***, 10 unordered pieces.
AC237963.1:81972-81993
TGATCCCGATTTTTATTTAGAAGTTGTAAA81972GCATCTCAATGTAAAAGCTTCCAACTGCATTTTTGTTGATGACAGGTATGTC
Solanum pinnatisectum cultivar CGN17745 chromosome 5.
CP047565.1:51391351-51391372
TGATCCCGATTTTTATTTAGAAGTTGTAAA51391351GCATCTCAATGTAAAAGCTTCCAACTGCATTTTTGTTGATGACAGGTATGTC
Solanum tuberosum cultivar Solyntus chromosome 5.
CP055238.1:57632834-57632855
TGATCCCGATTTTTATTTAGAAGTTGTAAA57632834GCATCTCAATGTAAAAGCTTCCAACTGCATTTTTGTTGATGACAGGTATGTC
Solanum verrucosum cultivar 11H23 chromosome 5.
CP133616.1:48564717-48564738
TGATCCCGAGTTTTATTTAGAAGTTGTAAA48564717GCATCTCAATGTAAAAGCTTCCAACTGCATTTTTGTTGATGACAGGTATGTC
Solanum dulcamara genome assembly, chromosome: 2.
OX359253.1:82316976-82316997
TGATCCTGATTTTTATTTAGAAGTTGTAAA82316976GCATCTCAATGTAAAAGCTTCCAACTGCATTTTTATTGATGACAGGTATGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCATCTCAATGTAAAAGCTTCC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATCTCAATGTAAAAGCTTCC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.110 | 0.102 | search_plus_done; http://172.18.8.135:50400/match?q=GCATCTCAATGTAAAAGCTTCC&k=0&no_gap=0&offset=0&limit=50
0.128 | 0.018 | search_minus_done; http://172.18.8.135:50400/match?q=GGAAGCTTTTACATTGAGATGC&k=0&no_gap=0&offset=0&limit=45
0.128 | 0.000 | cgi_end;

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