GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-12-18 18:43:51, GGGenome : DDBJ release 138.0 (Jun, 2025)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Fragaria x ananassa cultivar Benihoppe chromosome 24.
CP139752.1:27957915-27957934
CCCACGCTTATGGACCCGCCCATTTCTCCC27957915GCATCTCCAAAGCTCTCACGTACTTCTCTCTCTCTCTCTCTCTCTCTCTC
Fragaria x ananassa cultivar Benihoppe chromosome 23.
CP139753.1:26202303-26202322
CCCACGCTTATGGACCCGCCCATTTCTCCC26202303GCATCTCCAAAGCTCTCACGTACTTCTCTCTCTCTCTCTCTTACTATTTC
Fragaria x ananassa cultivar Benihoppe chromosome 22.
CP139754.1:27943672-27943691
CCCACGCTTATGGACCCGCCCATTTCTCCC27943672GCATCTCCAAAGCTCTCACGTACCTCTCTCACACTATTTCTGTTTTTGGG
Fragaria x ananassa cultivar Benihoppe chromosome 21.
CP139755.1:26288278-26288297
CCCACGCTTATGGACCCGACCATTTCTCCC26288278GCATCTCCAAAGCTCTCACGTACTTCTCTCTCTCTCTCTCTCTCTCTCTC
Fragaria vesca clone CFVCT017 microsatellite sequence.
DQ117024.1:212-231
CCCACGCTTATGAACCCGACCATTTCTCCC212GCATCTCCAAAGCTCTCACGTACTTCTCTCTCTCTCTCTCTCTCTCTCTC
Fragaria vesca AT1G06560 mRNA, partial sequence.
KY527649.1:86-105
CCCACGCTTATGAACCCGACCATTTCTCCC86GCATCTCCAAAGCTCTCACGCGGCCGTCTTGTTATTCATGTATAAGAGTG
Psococerastis gibbosa genome assembly, chromosome: 6.
OZ020489.1:26871789-26871808
ACGGTGATCTTCAAGAAAAATAAAAAGCTA26871789GCATCTCCAAAGCTCTCACGAGTGAGCCGCCAATTGTGGATTTGAGTACT
Fragaria vesca genome assembly, chromosome: 1.
OZ071055.1:9337721-9337740
GAGAGAGAGAGAGAGAGAGAGAGAGAAGTA9337721CGTGAGAGCTTTGGAGATGCGGGAGAAATGGTCGGGTCCATAAGCGTGGG
Fragaria vesca genome assembly, chromosome: 1.
OZ073117.1:9339955-9339974
GAGAGAGAGAGAGAGAGAGAGAGAGAAGTA9339955CGTGAGAGCTTTGGAGATGCGGGAGAAATGGTCGGGTCCATAAGCGTGGG
Fragaria moschata genome assembly, chromosome: 1.
OZ076519.1:9507411-9507430
GAGAGAGAGAGAGAGAGAGAGAGAGAAGTA9507411CGTGAGAGCTTTGGAGATGCGGGAGAAATGGTCGGGTCCATAAGCGTGGG

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCATCTCCAAAGCTCTCACG
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATCTCCAAAGCTCTCACG | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.097 | 0.088 | search_plus_done; http://172.18.8.135:50800/match?q=GCATCTCCAAAGCTCTCACG&k=0&no_gap=0&offset=0&limit=50
0.114 | 0.018 | search_minus_done; http://172.18.8.135:50800/match?q=CGTGAGAGCTTTGGAGATGC&k=0&no_gap=0&offset=0&limit=43
0.117 | 0.002 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).