GGGenome Help | English

データベース：
 

ミスマッチ/ギャップを許容 ミスマッチのみ許容 ： 塩基まで (検索する配列長の25%まで)
双方向を検索 ＋方向のみ検索 －方向のみ検索

2025-04-03 12:23:36, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

検索語に色がつきます（ミスマッチ・挿入欠失）。

CGN-33509 Leaf Coffea canephora cDNA clone cccl9j21 5', mRNA sequence.
DV690208.1:237-256
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA237GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CC-F01_014_B05 Cherry of different development stage Coffea canephora cDNA clone CC-F01_014_B05, mRNA sequence.
EE198840.1:210-229
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA210GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-LP1-004-C04-EB.F Coffea arabica LP1 Coffea arabica cDNA clone CA00-XX-LP1-004-C04-EB, mRNA sequence.
GT673486.1:241-260
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA241GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-IC1-010-B09-EC.F Coffea arabica IC1 Coffea arabica cDNA clone CA00-XX-IC1-010-B09-EC, mRNA sequence.
GW435116.1:197-216
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA197GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTGCTGCC
CA00-XX-RX1-015-A07-EB.F Coffea arabica RX1 Coffea arabica cDNA clone CA00-XX-RX1-015-A07-EB, mRNA sequence.
GW443421.1:206-225
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA206GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-RM1-045-G08-EQ.F Coffea arabica RM1 Coffea arabica cDNA clone CA00-XX-RM1-045-G08-EQ, mRNA sequence.
GW476878.1:202-221
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA202GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-LV8-021-E11-CE.F Coffea arabica LV8 Coffea arabica cDNA clone CA00-XX-LV8-021-E11-CE, mRNA sequence.
GW479271.1:171-190
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA171GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
CA00-XX-FB2-011-F06-EP.F Coffea arabica FB2 Coffea arabica cDNA clone CA00-XX-FB2-011-F06-EP, mRNA sequence.
GW485388.1:325-344
CAGTTCCTCTGCCAACCTCTCCTGCTCCCA325GCATTGCTCCCCCCACTTCATCAGCTCCGGTATCCCCTCCTCCTCCTGCT
Pyrrhosoma nymphula genome assembly, chromosome: 8.
OY754335.1:45439578-45439597
GGGCTCGTGTGCTCCAATGACCCCTAGAGC45439578TGAAGTGGGGGGAGCAATGCTCCTGGTAGAGCCATCCATTCCAGATAGGT

Data Export:

下記のフォーマットで最大100000件まで検索結果を取得できます。

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/ja/ddbj/GCATTGCTCCCCCCACTTCA
lang : ja | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATTGCTCCCCCCACTTCA | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.755 | 0.746 | search_plus_done; http://172.18.8.135:50400/match?q=GCATTGCTCCCCCCACTTCA&k=0&no_gap=0&offset=0&limit=50
0.842 | 0.087 | search_minus_done; http://172.18.8.135:50400/match?q=TGAAGTGGGGGGAGCAATGC&k=0&no_gap=0&offset=0&limit=42
0.843 | 0.001 | cgi_end;

GGGenome by @meso_cacase at DBCLS
This page is licensed under a Creative Commons Attribution 4.0 International License (CC BY 4.0).