GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-19 11:44:00, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

Capsicum annuum Takanotsume DNA, chromosome 6, sequence.
AP026701.1:208187057-208187078
GACTATTGATGTGTAATAGATTTTGTTGTT208187057GCATTTGGGAATAAATTTGGGCAACTAAAATAGAAAAATAAATTATAAAAAA
Capsicum annuum Takanotsume DNA, chromosome 9, sequence.
AP026704.1:258355551-258355572
GACTATTGATGTGTAACAGATTTTGTTGTT258355551GCATTTGGGAATAAATTTGGGCAACTAAAATAGAAAGATAAATTGTAAAAAA
Capsicum annuum Takanotsume DNA, chromosome 11, sequence.
AP026706.1:274567315-274567336
GACTATTGATGTGTAACAGATTTTGTTGTT274567315GCATTTGGGAATAAATTTGGGCTACTAAAATAGAAAGATAAATTGTAAAAAA
TSA: Capsicum annuum EJ_MegaContig_8696, mRNA sequence.
JW130077.1:598-619
TTTTTTACAATTTATCTTTCTATTTTAGTT598GCCCAAATTTATTCCCAAATGCAACAACAAAATCTGTTACACATCAATAGTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 11.
CP124721.1:2821366-2821387
TTTTTTACAATTTATCTTTCTATTTTAGTA2821366GCCCAAATTTATTCCCAAATGCAACAACAAAATCTGTTACACATCAATAGTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 9.
CP124723.1:8380272-8380293
TTTTTTACAATTTATCTTTCTATTTTAGTT8380272GCCCAAATTTATTCCCAAATGCAACAACAAAATCTGTTACACATCAATAGTC
Capsicum annuum cultivar G1-36576 isolate CaT2T chromosome 6.
CP124726.1:45084299-45084320
TTTTTTATAATTTATTTTTCTATTTTAGTT45084299GCCCAAATTTATTCCCAAATGCAACAACAAAATCTATTACACATCAATAGTC
Capsicum frutescens clone BAC PEPBAC043M10, complete sequence.
FJ597539.1:71237-71258
TTTTTTACAATTTATCTTTCTATTTTAGTA71237GCCCAAATTTATTCCCAAATGCAACAACAAAATCTGTTACACATCAATAGTC
Capsicum frutescens clone BAC PEPBAC268G7, complete sequence.
FJ597541.1:32860-32881
TTTTTTACAATTTATCTTTCTATTTTAGTA32860GCCCAAATTTATTCCCAAATGCAACAACAAAATCTGTTACACATCAATAGTC

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCATTTGGGAATAAATTTGGGC
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCATTTGGGAATAAATTTGGGC | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.099 | 0.090 | search_plus_done; http://172.18.8.135:50400/match?q=GCATTTGGGAATAAATTTGGGC&k=0&no_gap=0&offset=0&limit=50
0.145 | 0.046 | search_minus_done; http://172.18.8.135:50400/match?q=GCCCAAATTTATTCCCAAATGC&k=0&no_gap=0&offset=0&limit=47
0.150 | 0.004 | cgi_end;

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