GGGenome Help | Japanese

Database:
 

Max number of mismatches/gaps mismatches : (no more than 25% of the query length)
Search for: both strand plus strand minus strand

2025-04-08 04:04:12, GGGenome : DDBJ release 134.0 (Mar, 2024)

Summary:

Results:

Matches are highlighted with blue background. Mismatches and indels are marked in red.

BONOZ14TF BO_1.6_2_KB_tot Brassica oleracea genomic clone BONOZ14, genomic survey sequence.
BZ484346.1:408-428
AAAATATATTAATTGGATAGAAAGAAGCTA408GCCAAAATATACTATGCGTCTAATTATTTTTATTATTGATGATTATATATA
Brassica oleracea var. alboglabra clone BoB028L01, *** SEQUENCING IN PROGRESS ***, 3 ordered pieces.
EU642504.1:72943-72963
AAAATATATTAATTGGATAGAAAGAAGCTA72943GCCAAAATATACTATGCGTCTAATTATTTTTATTATTGATGATTATATATA
Brassica oleracea HDEM genome, scaffold: C6.
LR031880.1:39991765-39991785
AAAATATATTAATTGGATAGAAAGAAGCTA39991765GCCAAAATATACTATGCGTCTAATTATTTTTATTATTGATGATTATATATA
Brassica oleracea var. botrytis mRNA for MADS-box protein AP1-c.
AJ505846.1:949-969
TATATATAATCATCAATAATAAAAATAATT949AGACGCATAGTATATTTTGGCTAGCTTCTTTCTATCCAATTAATATATTTT
Brassica oleracea homeotic protein boi1AP1 (Boi1AP1) mRNA, complete cds.
U67451.1:955-975
TATATATAATCATCAATAATAAAAATAATT955AGACGCATAGTATATTTTGGCTAGCTTCTTTCTATCCAATTAATATATTTT

Data Export:

Maximum 100000 results can be retrieved in various formats shown below:

Debug Info:

Redirect URI : https://gggenome.dbcls.jp/en/ddbj/GCCAAAATATACTATGCGTCT
lang : en | db : ddbj | k : 0 | strand : | nogap : | query_string : GCCAAAATATACTATGCGTCT | format : html | download : | debug : 

0.009 | 0.009 | search_start;
0.104 | 0.095 | search_plus_done; http://172.18.8.135:50400/match?q=GCCAAAATATACTATGCGTCT&k=0&no_gap=0&offset=0&limit=50
0.120 | 0.016 | search_minus_done; http://172.18.8.135:50400/match?q=AGACGCATAGTATATTTTGGC&k=0&no_gap=0&offset=0&limit=47
0.121 | 0.001 | cgi_end;

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